G33478


Basic Information

Item Value
gene id G33478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32342865 ~ 32345335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU37902
TGAATTTATTAGAGATCTTTTGTAAAACAATTAGTTATCAGATCATTCAAAGTTGTGAGGCAGCTTCCAGAAGCAGTCAGTCAGCTGGAATGTATGCCTAGCCCAGGGAGATTGAGTAGGGGTGTGTGGAAGAGTCAGATTAAGTGTGCAAAATCAGCCAGAAGAGCACACCTAACCACAATCATGCGCAGCTGAACCAAAGCATGCCCCTGCACTATACAACACTGATATTGGCCTTGTTCCAATGCTTAGAAAACACAATTTCTGCTTCCTTTCCTTCAGGTTATCAAAGATTGGTCAAGTGAGGACAAGGTTTCCACTGCATTGTTTCAAGCCAGTACTTCTTAAATCTAATACATTTCAAGGAAGGGCAGGAGGGAAGAAAACATTTAAGTATTAGAACAGGCAGTCTGGGTTAGGTGCTGCTTATTCTCACAAAACAGCCTTGTGTGGTTTCAACTTGCTTGAGGTAGAAGTTGTACCTAAACACAGCTCCTACATCAGATAACCCATCCTAACCTGAACCATAAGGTGGATGAAAAAGTATTCAGCCCGTTTCAATGCTTAGTGGCAGCAACTACCTTACCATTTCAGATTCCCAGTTTAGATCAAAGCACATTAGGAAATGGGTTAttgcataaaaaataaaaaggacATGTGGAGAACCCAGAGCAAACCTACTCTACAATGAGATGAAGAAAATAGGAAGTACCAGGAGCCAACTGTTTCCAGTGGTTCCATTCACTAAAAGGAGTTCCATTTGGCTCCCAGGGCACAAAAACTTCCTCAAACATCTTGAGGTTTATGGCATCAGTGTCTTCATCTCATTCTAGAAGCTTCTGTCCTTACCGAGGTGACAGAATGGCAATGAGGTCACAGGGGTGAGGGGTAAGGTTGTTTCAGTGAAAATGTCCATGAAGTCTAGTGGAGCTGAACAGTTTGAGGTAGAAGTTGcccttaaccacagatctaggatcagattacaaCACACCCAATCCTAATCTTAACCATAagcatataaaaataaaaaaaagtgaccCAGGATCAGCGTTTTGGGGCAACTTCGACCCAGCTGAACAATGTGCAGAGGAAAGAGGGGTCGTCTCCAAGGTGTCTCAGAGCAGCAATTTCTAAACATGCAACAGAGCGACAGTTTATCTGCTGCGAGACATGAGGTTGGGGAAAATGTGAAGATTAGACAAGTATCTGAAGGGATGACAATAAAGTAAAAAGAGTAGTAACATAACATGTTCCAATAGGTATTGATTGCATTGTCCACAAGTTCTGTCCACTCTAGGGGCACAGGTTCTTCAAGACCAAAGTTCATTAAAGGTTTCAGTCTCTCTCCGAGGTGTTCTCATCCTCTCTATCGTGCTCTGCTTTTCTCGTCTGTGATGTCCGGTATTACTGCTTGGACAGCTCGTTGGAAAGCCAGTCCAGTCCTTCATACAGTCCTGTGCCCTGCGTCGCACAGGTCGCCTGCACGTGCCACTAAGGAGGAAGAGTGAGAAATAAAAACATTGAGGAGTGTGCGTGTATGTCTGTCGGCGTTTACACGGGCGTGAGTGAGACTCACCACTCTGCTGCGGAGGCTCTGCAGTCCCAGTTTGTCCGTGAGGTCGCTGACCGCCATAGCGTTGGGAAGGTCCTGCTTGTTAGCAAACACCAGCAATACTGCTTCTCTCAACTCATCCTCctggagctgggggggggggggggggcgcagagTGATTAGATCGCAGGTTTGGGATACGAAGTTTCAAAGCTTATTCCCCACGTGCACAGGACACAAGAGGTATAAAACAGTACAGTGTAATTCATACCTTGAGAGGgcgttcccaacaatgcagtgataGAATAACTTGTCATAGTTTATTGTAAAAGGAACACAAGTATATACACATGTCAGTGCCAGTACCTTGTTCAATGTGCAGGTACAGGAGTGGTTAAGGTGGGTTTATACATaaagtgactggtagtagACTATTCAAGCAAACAGGGCTgaaaaagtgactggtagcatgaatatataaatacttttgGTAATATACCAATTATATACacaactgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacatttttagtccattaaaataacatcaaattaatcagaaatacagtgtagacattgttaatgttgtaaatgaaaaTCGCATATTTTTaatggaacatctacataggtgtactgaggaccattatcagcaaccatcactcctgtgttccaatagcacattgtgttagcacagctgataactgttgttctgattaaaaaagcaataaaacaggccttcttgagactagttgagtatctggagcatcagcatttgtgggttcgattacaggctcaaaatggccagaaacaaagcactttcttctcaAACAGGA

Function

NR:

description
PREDICTED: ADP-ribosylation factor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37902 True 2430 lncRNA 0.43 2 32342865 32345335

Neighbor

gene id symbol gene type direction distance location
LOC110521325 LOC106573469 coding upstream 24320 32269054 ~ 32318545 (+)
zgc:162879 LOC106573468 coding upstream 127312 32204475 ~ 32215553 (+)
LOC110521304 LOC106573467 coding upstream 138553 32099209 ~ 32204312 (+)
LOC110521263 idhp coding upstream 353616 31980285 ~ 31989249 (+)
LOC110520271 LOC106573485 coding upstream 375989 31964564 ~ 31966876 (+)
si:dkey-30c15.2 LOC106573475 coding downstream 8033 32353368 ~ 32360898 (+)
terb1 LOC106573465 coding downstream 91571 32436906 ~ 32446878 (+)
si:dkey-30c15.13 LOC106573478 coding downstream 136127 32481462 ~ 32485466 (+)
LOC110521454 LOC106573411 coding downstream 388184 32733519 ~ 32751025 (+)
LOC110521475 LOC106573462 coding downstream 406111 32751446 ~ 32753760 (+)
G33471 NA non-coding upstream 9231 32278447 ~ 32333634 (+)
G33606 NA non-coding upstream 69345 32273314 ~ 32273520 (+)
G33484 NA non-coding upstream 117337 32219449 ~ 32225528 (+)
G33474 NA non-coding upstream 124941 32217150 ~ 32217924 (+)
G33576 NA non-coding upstream 133740 32208923 ~ 32209125 (+)
G33639 LOC106573471 non-coding downstream 27061 32372396 ~ 32374666 (+)
G33667 LOC106573473 non-coding downstream 76003 32421338 ~ 32421889 (+)
G33701 NA non-coding downstream 129563 32474898 ~ 32475128 (+)
G33702 NA non-coding downstream 135132 32480467 ~ 32480687 (+)
G33284 NA other upstream 381318 31956530 ~ 31961547 (+)
G33249 NA other upstream 491896 31850473 ~ 31850969 (+)
mef2aa mef2a other upstream 3089647 29188958 ~ 29316547 (+)
LOC110520661 LOC106573762 other upstream 3275070 28903691 ~ 29067795 (+)
G28416 carmil2 other upstream 4294503 28047626 ~ 28048362 (+)
G33681 LOC106573476 other downstream 105519 32450854 ~ 32452385 (+)
G33768 NA other downstream 267738 32613073 ~ 32617684 (+)
sema3e LOC106573450 other downstream 977432 33268524 ~ 33326523 (+)
LOC118964465 LOC106573449 other downstream 1046388 33371468 ~ 33402776 (+)
G34963 NA other downstream 1356442 33701777 ~ 33703462 (+)

Expression

G33478 Expression in all Baseline Samples

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G33478 Expression in each Bioproject

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G33478 Expression in each Sample
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G27685 NA non-coding CI01000004 null 4961931 ~ 4964228 (-)
rainbow trout (Oncorhynchus mykiss) G27294 NA non-coding NC_048565.1 CM023219.2 26973746 ~ 26973945 (-)
tiger barb (Puntius tetrazona) G21045 NA non-coding NC_056701.1 CM032070.1 17980167 ~ 18067318 (+)