G34399 (LOC106573462)


Basic Information

Item Value
gene id G34399
gene name LOC106573462
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 32748929 ~ 32754202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU38922
TTTGACTAGAAGAGATTGTTGTTTCAGTAGAATTTGGTAAAAGGCTGATTTAGCCACCGCTCCTCCTGGTTGCAGGGCCACATATAGCTTTCTCATCTTTGCCATACTGGTTTGGGCCGCAGTGATTTCAGAGTAATCCTCATAATGGATCATTTTCTTCTGGAACAGGCCATCTGCTATTGGCATCACCAGGGAAATCCTTTGAACAAGTTGTTCCATGTTATCATCCACAAATTGGGCACCTGGGTTAGAGAACATTTGTTATTCAAACAACCTTAAAGAATGATTGATTTTCAGTGAATCTAACCGTGAATGTACAGGACTATACAGGTGAGACCGTAATACAGAAGATTTTCTTTTGGCATCATTTGACAAACATGACTTAAGAAAGACCTTGCATCAGAATTGTTTCCTGAATGAAAATGACATTCAGTAGTCACAATCTGAGTTACTAAAATGCATTTCCTATCAGCACCAAACAaagcttttttttaaagagttgAGCATGCCATATTTTCCATTATGAATATTTCCTCAGTAATATGCATACTGTTGTCTTGCAGATTGATAGACTCTTGACTTTAGGTCATCTATTTATTCATCACGCCTCTCAGTGTGAAACTGGTCAATTACAGTAATTATTTAGTTCCATTATTTTGTAGTATCTTCTTACAACACTAGTTCAGTAATATTTCAGCATGTATCCCACGCAAACAAGGCAGGTTACATTACCATACTGCTTTGTCTCCATGACTGCAGATTGATCCTGGCTAGTGTTTCAGCAGAGCTTTGGAAAAGGTTGATTTAGCCACTTTTCCTTTTGATTAGTCTCATCTGTGCCTGACTCCATCAGACATGACTTTCTGCACAACAACAAAATCACATCAAGGGATATTTCCCATGCAGTGACGTGGGTTGTCAAACAGGACattcagacaggacagacagatagGACAACATATAATGACAAATGGGCAAAAGCTGCAAGGGACCATATGCATGTAATAGCAATTATATTTTGTCTATATGGATCACATCCTGTCTGAGGTTATAAAAAGTAAAGGTGTCCAGACTTTTTTCAGTCTATTGACCAAAACGTTGATTTATGAAaagttcaaaacatttttggaGTATGCATGACTGCAAATTCACTGGACTTTCACTTACAAGTATTGACATTTTTCTAATGTACCTGGAGAAATACAAGGAGTGCAAATAACTCTGTTTTTCATATCTGATCTATTTGACAAGCTGTTCTCACACTCATATGATTGGAAGTTAAGAGAAGTGAGAGATATAGAGAGTAaggg
>TU38918
TTTGACTAGAAGAGATTGTTGTTTCAGTAGAATTTGGTAAAAGGCTGATTTAGCCACCGCTCCTCCTGGTTGCAGGGCCACATATAGCTTTCTCATCTTTGCCATACTGGTTTGGGCCGCAGTGATTTCAGAGTAATCCTCATAATGGATCATTTTCTTCTGGAACAGGCCATCTGCTATTGGCATCACCAGGGAAATCCTTTGAACAAGTTGTTCCATGTTATCATCCACAAATTGGGCACCTGGGTTAGAGAACATTTGTTATTCAAACAACCTTAAAGAATGATTGATTTTCAGTGAATCTAACCGTGAATGTACAGGACTATACAGGTGAGACCGAAACACAGAAGTTTTTCTTTCGGCATCATCTGACAAACATGACTTAAGAAAGACCTTGCATCAGAATTGTTTCCTGAATGAAAATGACATTCAGTAGTCACAATCTGAGTTATT
>TU38923
AACTTTACACTGTGTAAAAATGTATCCTATCCACCACCTGGACCTGAACACTCACCACATTGACAAACTCTTATATTTCACAGATGTAGTATTggatcaactttttttATTTATTAATATGTTTCCAGGTATGTTTAAGGCATAATGGTGAGACATTTGCAGCATTCCCACcacaggtggctggtggcaccttatttggggaggacgacctcatagtaatggctggaacggaatgaaTGTAACGGCATTCCATTTCCTCCATTCCAGTCCTTACTATGCGCCGTCACctcctcaccagcctcctgtgattcACACACACTGGTTTTCAAAATCTTATATAGTAAAACCATTAAAGATTCAGATGTCAAGGTTTTTGTATGACTTCTCCTGTCTGTTGGCAAATTCCAGTCCGGGTCCTAGTTCGCTGTCTTCGGTAGGCAGTCTGAACACTTAAGCAACCAGGAAAAGACATGACGTGATTCAATATTTTTCCTGTATTTATTTTGTTACAAATTGTTGTTTGACAACTGGTGTGAAAGGACCAATATTTCTGAGGTAATGTGTGAGATTTGAAAAAAAGTGAGTCCAGACCAAGACTGTAGAAGCCGCTCAAGTTATGACTTCATTTCTGGACAACCCCACCCAGTTCTTTGACTAGAAGAGATTGTTGTTTCAGTAGAATTTGGTAAAAGGCTGATTTAGCCACCGCTCCTCCTTGTTGCAGGGCCACATATAGCTTTCTCATCTTTGCCATACTGGTTTGGGCCGCAGTGATTTCAGAGTAATCCTCATAATGGATAATTTTCTTCTGGTACAGGCCATCTGCTATTGGCATCACCAGGGTAATCCTTTGAACAAGTTGTTCCATGTTATCATCCACAAATTGGGCACCTGGGTTAGAGAACATTTGTTATTCAAACAACCTTAAAGAATGATTGATTTTCAGTGAATCTAACCGTGAATGTACAGGACTATACAGGTGAGACCGAAACACAGAAGTTTTTCTTTCGGCATCATCTGACAAACATGACTTAAGAAAGACCTTGCATCAGAATTGTTTCCTGAATGAAAATGACATTCAGTAGTCACAATCTGAGTTATT
>TU38924
TTTGACTAGAAGAGATTGTTGTTTCAGTAGAATTTGGTAAAAGGCTGATTTAGCCACCGCTCCTCCTGGTTGCAGGGCCACATATAGCTTTCTCATCTTTGCCATACTGGTTTGGGCCGCAGTGATTTCAGAGTAATCCTCATAATGGATCATTTTCTTCTGGAACAGGCCATCTGCTATTGGCATCACCAGGGTAATCCTTTGAACAAGTTGTTCCATGTTATCATCCACAAATTGGGCACCTGGGTTAGAGAACATTTGTTATTCAAACAACCTTAAAGAATGATTGATTTTCAGTGAATCTAACCGTGAATGTACAGGACTATACAGGTGAGACCGAAACACAGAAGTTTTTCTTTCGGCATCATCTGACAAACATGACTTAAGAAAGACCTTGCATCAGAATTGTTTCCTGAATGAAAATGACATTCAGTAGTCACAATCTGAGTTATT
>TU38925
TTTGACTAGAAGAGATTGTTGTTTCAGTAGAATTTGGTAAAAGGCTGATTTAGCCACCGCTCCTCCTGGTTGCAGGGCCACATATAGCTTTCTCATCTTTGCCATACTGGTTTGGGCCGCAGTGATTTCAGAGTAATCCTCATAATGGATCATTTTCTTCTGGAACAGGCCATCTGCTATTGGCATCACCAGGGAAATCCTTTGAACAAGTTGTTCCATGTTATCATCCACAAATTGGGCACCTGGGTTAGAGAACATTTGTTATTCAAACAACCTTAAAGAATGATTGATTTTCAGTGAATCTAACCGTGAATGTACAGGACTATACAGGTGAGACCGTAATACAGAAGATTTTCTTTTGGCATCATTTGACAAACATGACTTAAGAAAGACCTTGCATCAGAATTGTTTCCTGAATGAAAATGACATTCAGTAGTCACAATCTGAGTTACTAAAATGCATTTCCTATCAGCACCAAACAaagcttttttttaaagagttgAGCATGCCATATTTTCCATTATGAATATTTCCTCAGTAATATGCATACTGTTGTCTTGCAGATTGATAGACTCTTGACTTTAGGTCATCTATTTATTCATCACGCCTCTCAGTGTGAATCTGGTCAATTACAGTCATGTTTTAGTTCCATTTTTTGAAATATCTTCTTACACAACACTAGTTCAGTAATATTTCAGCATTTATCCCATGCAAACAAGGCAGGTTACATTACCATACTGCTTTGTCTCCATGACTGCAGATTGATCCTGGCTAGATTGGGGAGTAGCATCTTGATCTGGCAAGAGAGAAAGACTCTCCATGACATtgtttgtaaagaatcaacatcCAATACATGTTCTGTATTTGTAGCCTGAGTTAAATAGAGCACATATTGACGTAtggcatgcagaactgcttttaCTTCATTGCACAAGTAGGCCGACATTCAGGGGCAGCTTCCTGAGCACAGATTAGAAGCCTTCTTCTTTTTTTGCCCTCGGTCTTTAACTTATCTGCTAGATCAATCATTCCTATGTTCTCCAGGATCTTCTGTGTGATTTTCATAGCACCTTCTTTCTTGTAGGCCTGCACCATCTTACTCACTGTCTTGTGCCTGCTAGCATCCTCTAGACTGGCGATTGACATGGGATTGAAGCCTTCGAGTGTTTCCTCCATCAGGTTCCACTGGAAGGTCTCAAATGTAGCCTTGTCTAGTTTTTCTAGGGTAGCCAGCAGCCGCTGTGGAACTGGTGTGGCCATTG

Function

NR:

description
uncharacterized protein LOC110521475 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38922 False 1310 lncRNA 0.37 2 32748929 32753307
TU38918 False 453 lncRNA 0.40 2 32749788 32753307
TU38923 False 1102 lncRNA 0.40 3 32749788 32754202
TU38924 False 453 lncRNA 0.40 2 32749788 32753307
TU38925 True 1262 lncRNA 0.40 2 32751815 32753307

Neighbor

gene id symbol gene type direction distance location
LOC110532201 LOC106573459 coding downstream 14480 32530266 ~ 32734449 (-)
LOC110521272 LOC106597893 coding downstream 248094 32485245 ~ 32500835 (-)
LOC110521397 LOC106573476 coding downstream 291729 32450847 ~ 32457200 (-)
LOC110521450 NA coding downstream 323680 32423864 ~ 32425249 (-)
pdp2 LOC106573473 coding downstream 326023 32416697 ~ 32422906 (-)
LOC110521494 LOC106573457 coding upstream 6995 32761197 ~ 32783979 (-)
LOC118964459 NA coding upstream 85243 32839445 ~ 32844732 (-)
grm3 LOC106573453 coding upstream 120714 32867631 ~ 32924599 (-)
lrrc4.2 LOC106573446 coding upstream 970647 33724849 ~ 33729966 (-)
rbm28 rbm28 coding upstream 1190632 33944834 ~ 33953935 (-)
G34392 NA non-coding downstream 22848 32725800 ~ 32726081 (-)
G34391 NA non-coding downstream 24058 32724585 ~ 32724871 (-)
G34382 NA non-coding downstream 32929 32715707 ~ 32716000 (-)
G34376 NA non-coding downstream 38176 32710519 ~ 32710753 (-)
G34370 NA non-coding downstream 46321 32702399 ~ 32702608 (-)
G34406 NA non-coding upstream 186 32754388 ~ 32754754 (-)
G34348 NA non-coding upstream 5970 32760172 ~ 32760774 (-)
G34409 NA non-coding upstream 9053 32763255 ~ 32765669 (-)
G34424 NA non-coding upstream 24459 32778661 ~ 32806126 (-)
G34458 NA non-coding upstream 80465 32834667 ~ 32835184 (-)
G33386 NA other downstream 762779 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 1303980 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 other downstream 1616038 31131151 ~ 31132900 (-)
G29906 mef2a other downstream 3468229 29280276 ~ 29280700 (-)
G29355 NA other downstream 4044573 28703887 ~ 28704356 (-)
G35075 LOC106573452 other upstream 352917 33107119 ~ 33108497 (-)
G35299 NA other upstream 688166 33442368 ~ 33452413 (-)
G35628 NA other upstream 1113356 33867558 ~ 33868045 (-)
G36141 NA other upstream 1523498 34277700 ~ 34362736 (-)
G36196 NA other upstream 1587360 34341562 ~ 34381232 (-)

Expression


Co-expression Network