G35969 (LOC106573441)


Basic Information

Item Value
gene id G35969
gene name LOC106573441
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33969190 ~ 33970767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU40662
gccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctttacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaagtgcatttatacagagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgtactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcacaaggcactgtaaggGGTTACTCTCATCACACTGCCACAGTAAATCAGTACATTCACCATCAGTATTTTACAAAATCGAAAATAGGTCAATTCTGCCAAATATCCTTTAAATACTAGGGGAGACTATTCTTACCAACACCCTGAGGGTGTTGTAAAAGTGGACATATCACTGTGACATGGGGGTGAAGGGATACTCTTACTTATGTCTGTTCCTGTTTCCTCTGTGAAGTCCTGTAACTCGTCTCCAATCCCTTCCACCATGATATCTCCCTCCAGTATGTCTCTCTGTTGAGTGGCTGAGAAGTCCAGAGCTAACAACTCTCTGTTTGTGGCCTGGGCTCTGGGTTGGTCCTGGTCCGAGTAAGTTGTAGACCCTAGCTGTGCATTCACTGGGGCTGGTGATGTAGGTCTAGTGAGTGGATTAAAGCCTTGGGTCTCTGTGTAGTCACTGATAGTTCCCTGAAACTcgtctttgttgtcctttttcTCAGTTTCCTCGGGTGCCAATGTGGAGTCTTTCAGCCCTGTTAACGAGTCCAGAGAGTCGGCCATTCTGGCTCCAGCGGTGGGGACTACAGGAGCCCAGGAGGGCCATACAGTGCTGTGTGAGGCCAGTACTGGGTCatcgatctgtctgtctgtatgtgggtgTGATGGTGCCTTTGTGGTGCCCTCTGGGGCCAAGGTAAAGGCttgaagatggaggagaggagcaagggagaggaggagagaggtccaCATCACAGCAGCCATGATGGAGTCCCTGTAGTGTAATATTCTCTTTGAAGTCACATGATTCCCAACGAACACTTCTTTCACCTCAACGCCACATACTTAAGAATAGGCTCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40662 True 1578 lncRNA 0.41 1 33969190 33970767

Neighbor

gene id symbol gene type direction distance location
LOC118966666 LOC106573442 coding downstream 7094 33959328 ~ 33962096 (-)
rbm28 rbm28 coding downstream 15255 33944834 ~ 33953935 (-)
lrrc4.2 LOC106573446 coding downstream 239224 33724849 ~ 33729966 (-)
grm3 LOC106573453 coding downstream 1044591 32867631 ~ 32924599 (-)
LOC118964459 NA coding downstream 1124458 32839445 ~ 32844732 (-)
LOC110521614 LOC106573524 coding upstream 12610 33983377 ~ 34002282 (-)
si:ch1073-390k14.1 LOC106573523 coding upstream 38513 34009280 ~ 34018443 (-)
LOC110521650 LOC106573438 coding upstream 54418 34025185 ~ 34040439 (-)
iqsec3b LOC106573430 coding upstream 229588 34200355 ~ 34245388 (-)
LOC118964492 NA coding upstream 325920 34296687 ~ 34302605 (-)
G35979 NA non-coding downstream 841 33968057 ~ 33968349 (-)
G35968 NA non-coding downstream 13722 33954501 ~ 33955468 (-)
G35966 NA non-coding downstream 26218 33942726 ~ 33942972 (-)
G35964 NA non-coding downstream 30140 33938838 ~ 33939050 (-)
G35961 NA non-coding downstream 32722 33936214 ~ 33936468 (-)
G35982 NA non-coding upstream 2739 33973506 ~ 33973779 (-)
G35986 LOC106573441 non-coding upstream 3508 33974275 ~ 34068011 (-)
G35988 NA non-coding upstream 75545 34046312 ~ 34047304 (-)
G36028 NA non-coding upstream 113138 34083905 ~ 34084325 (-)
G36030 NA non-coding upstream 115321 34086088 ~ 34086337 (-)
G35628 NA other downstream 101145 33867558 ~ 33868045 (-)
G35299 NA other downstream 516777 33442368 ~ 33452413 (-)
G35075 LOC106573452 other downstream 860693 33107119 ~ 33108497 (-)
G33386 NA other downstream 1983040 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 2524241 31426123 ~ 31444964 (-)
G36141 NA other upstream 306933 34277700 ~ 34362736 (-)
G36196 NA other upstream 370795 34341562 ~ 34381232 (-)
G37310 LOC106573403 other upstream 1302942 35273709 ~ 35278005 (-)
G37907 NA other upstream 1470151 35440918 ~ 35441328 (-)
G37976 NA other upstream 1612525 35583292 ~ 35583608 (-)

Expression


Co-expression Network