G35986 (LOC106573441)


Basic Information

Item Value
gene id G35986
gene name LOC106573441
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 33974275 ~ 34068011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU40679
TCACCAGTGACAGGCATGGCACTGCATTGTGTGTAAAAAAACAGCTATATCATATACATTATATAAGACAACGCAAACACTTTACTAGAACCCTCTGTCATAAGggctacataacatgtcacaaaCAATCATACTGTGTCAATTTATCACAACTGATTTTACACCAACAGTCATGACTGTTTATGACATTGTTATGGCAGTGTTAAATAGCCCTTATAACAGAGGGTTTAAGTGAAGTTGAACCAGACCAATAACAGTGGTTATAGATGGTCATACAGTGAGGGGCATTATACATTTATGACAACGATAACTAAAGAAGCCTGAGGGGAAATCTGACTTTAATAATCCTCCAAACTTAGTGTAGtatgtttgtgtagtgtggcacAGCATAGAATTCAGCAGATTCCAAAATAAAACAGGATGTTCCAGCCCTGTACTGCACAGGGCTATGAATATGTTGTGCTAATACAGGGACTAGATCAGAAATGTAGGAGGTTCTCGGACTAAAGTTGAGAAACACTGATCCCTAATTAAGCATCACCAAGGGACTAAAACCTGCACACAGGACCGCTATTGGCAGATGCATGAAGATTTTCAGGCACACTCCTTGGATTACGATTGTCCACATTGCTGGTCTGCATATCAACTCAAAGAGCAGTTTGTGGTGGTAGCCCATAGAGTGGCCCCCGTGTTATAGCTCCCCcattgtaaataagaatttgttcttaactgatttgcctggttaaataaaaaatcgaATAAAAAAATGCTTGCACACGGAATCCAAAACCAAAAACCTGTGGCATTTGTCATTATTTTCTCCATTCAAATTGTAAACTTAAGTATACTCAAATGTGGTTCTGCaatgttgaaaatccaataaAAAGGTGTGGAGACAAGTTATTCAAGTTATTCTTATTTTAGAAGAAATAGGGAAATATTTAAGaaaagtgcaagggtgccaatatatttgtcctcaactgtgtgtttgtattactAGAAAGAATAATTTTTTCAAACATCATAAACCCAATTTGTTTATCATACCTCGTCTACGATGCATGACATACCAGTAGAACTCTTTTCCATGTACATTGTATTTACAATAAAACATttactgagtataccaaacattaggaacaccttcctaatattgagttacaccctccacttttgccctcagaaattccttaatttgtcagggcatggactctaaaaggtgttgaaagcgttccacagggtgATGGAAcgttcttgacacacacaggaaactgttgagcatgaaaaacccaacagGGTTagagttcttgacacaaactggtgcgcctggcacctactacagtACCCAgttcaaaggtacttaaatattttgccATTCACCCTCTGGCACatatccatgtctcaattttctcaaggcttaaaaatccttctttaacctgtctcctcccattcattaacactgattgaagtggatttaacaaatgacatcaataagggatcataactttaacttggattcacctggtcagtctgtcatggaaagagcaggtgtccttacgTTTAGTATACTCTGTATATTTTACACAGTCTTTAATGATATATACACCGTACGACACCGCGTTACACATTGTAGAGAAAGGGTTTGAAATATCCGAAGTTGAGCCGTTTTTCAATGAAATTAAAAACGTTGAGTGAGATCTTTGCTTTGGTATCGGGTTCCATTGCTGCATTTGACACTTGAACACTAGTATAACTCCTAGTTTATACTGCTGTTGTGACATAAACAGGTACGGTTGTATTGCTTGGTGGTAGGACACGCTTTATAAATTCTTTATAAACTGTTTATTAAAAAACAGCTATAATGTATGAGTTACACTTTatgttctctctcccccagtaGATGGCACTAAAGCATAACGTGATCTTGCATATTGGCATGGTTATCATCAACACTACactgacatttcatattcaaaGTTCTTCAAATCAGTTCTACTTTGGTTGTTTCAGTAAGTCCATTGTTCATTTAGCACATTTTGGAACTAACTGTACAGTTATATACAGCTTATAACTAATCAAACATAACTATCTATAAGTCTATTTTCTATGTGTAGAATCCCCATAAAACGGCAACTGATAGTTAGTTCTACCTCTGTACACTTCTGTTGTAGCAGTGAAAAAGCTGCTTGATCTGAATGCTAACATCACTCAAACACTAAGTGCAGCGTATCAGTTAAGTCCTCAGCTCTCACTAGAGGTCAATATATAATCTCTGTGCATTATACATGTCATATCCTTACGTCCTTGTGGCACATAGATGATGCATGGTTCAAACCCTGTAGCATCTGCCTACAGGTCAATAGTGTCACTGCACACGCTAAGAGCATCAATCTGTCGGCACACGTTGACGAATTCCGCTTGTACGGCCGTATCCCGTTCTAGCAACCTGCTTTCACTCAGGTCCTCTCTGCCCTCCAGCCGCCCCTCCCCCCGACTGTCCTGAGAGGCCGAGCTGAGGGTGCGGTAACGTCTGTGATAGGTAACGTGGGGGAGTGTCCTGGGCAGGCTGCTCTGGGAAGGCTGCcctctggtggtgtgggggtgtgaCCATGCCCCTCCTGTCCCTGAGCTGGAGAACAGACCCTGGGAAGACCCACTCAGGGACTCCTGGCACAGATAGCTGGAGTTACTACCTCTCCACCAGCACTCAGGCGGACAGCAGGGATCGCTGTGGCCTGGGAGAATGCATCCCGGCTGGGGAGGCCGTGTAGGAGACATATCCACATCTCCACAGGAAGAGGTCCGGTAGAGGGGACTGTCAGCTGAGCTGTTTCCAGGCCATGAGGCACTCTGGCTGTGGTGGGAGCCAGGGGAGTTCAAGGAGAGGCTGGAAGAGGCGTGGAACAGCCTGGAGGGGCTGAAAAGGCTGTGAGGGAACAGGGTCTCGCTGTACAGGGCCTGGTCTATGCTGCGGGACAGGTCAATGGGAGAGGGGGGGTGCAGGTCCACTGTGGAGTCAGTGTCCAGACATAGACTACCCTGGGAGGAGCCCTGGGACTCAACCCCAGCTTGAAGTCTCCCTGGTGGGCTTGGAGGATCAGGGAGGTTGGGGTGTCTGGAGGTTTTGGTCTGGCCagggtgggggttagggttaggatgcaGGTTCAGTCCATTTGAAGAGGGTTCCATTATTGTGTAGAGGGGGAGGGCTTCGGACTGGCGCTTCCTGATGACATCACACACCACCTGCTTCTCTTTCTGCCCAAGGGACCAGGGGTAGTgaggggggaggatgggagagaggggaagtgggTGGCTAGGCCCTCCTGCCGGTGAGGCACAGGGCAGCCGCGCCCAGGACCCCTGACAGGTGTTGGTGTTGAGTTTAGTCCGGGAGGAGGAGTTAGAGTTGGAGCAACAGAAGAGGAGGGGCTGAGTGCCGATGATTGACAGGGACAGACACACCCCCACCTCACAGAGCCTGCAGCCCAGGTGGTATGCCCACCAAGGCCAGGGCTGGAACCCTGCCCCAGCACTCACCCCTCCGAGCCCTAATGCATGTAACATCCCATACAGCTGAAGCCCCCCACACCCTAACAGGCACAGAGCCCCTCCCACTCCAGCCCTTGCTGCCCTTCTCCACTCCTCAGCCTCAGCGAATGGGCACCGGGACAGCCGCCCCACCAGAACTGGGGAACCTGTTACCTCTCCCTCGCTGTCACTCAGCCGTTGGATGTGTTTGGCGTCTTGTCGCACATGGCAGTAGAATAGGAGGAaggagcaggggaggaggaggcagaggaggatgaACATTCCCtgggggagcaggaggaggacagggaggctGGGGAAGACATGGAATAGAGCTATGGAGCCCAGGAAGGCCCCGAAGTGCATCAGGGAGAGGAAGAACAAGAGACAAGGCCTGtgcagggtggagagagggagggagagagagagggaaaaatgaAGGGAAAGGTGCATGCGAGagcggagggagagaaggaggaagcaGACGGAGAAGGCAGAGGTGAGGCAGGGGAAGGGTAgttcagagaggaggagaaagccCAGAGCAGGCAGGTGGTCCTGATGACTATAAGCATCATACAGGAGAGAGAATGCTCTAGTGCCTCCGGTGGCCAGGAGGAACAGGTGCAGCAGGGTAAAGTAGGGGCTTCCTGGGGGGCAGCGCAGGGGCAAACCTAACAGGCAGAGAACAGATATCAGACCTAATGCAGTGAACACAGATCCCAGACCGTAGATGTGGGCCTCCCAGGCAAAGCCCCAGGTGGCCAGAGCTGAGTTCCAATCAGAATACAGAGGTACaaagagaggaggggttagagaCAGAAAGGGGCGCTGGGATTGATTGGAGATGATGTCATCGGGGTAAAAGGGGCTCCAGGATTGATCAGTTGTGTTGCAGGGTGTGGTTCTGGTGTCAAGGCTGCAGTCGACGAGAGCCGACTCATTGGTGGCCGACTTTGGCCACCC

Function

NR:

description
proline-rich transmembrane protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40679 True 4497 lncRNA 0.48 2 33974275 34068011

Neighbor

gene id symbol gene type direction distance location
LOC118966666 LOC106573442 coding downstream 12179 33959328 ~ 33962096 (-)
rbm28 rbm28 coding downstream 20340 33944834 ~ 33953935 (-)
lrrc4.2 LOC106573446 coding downstream 244309 33724849 ~ 33729966 (-)
grm3 LOC106573453 coding downstream 1049676 32867631 ~ 32924599 (-)
LOC118964459 NA coding downstream 1129543 32839445 ~ 32844732 (-)
iqsec3b LOC106573430 coding upstream 132344 34200355 ~ 34245388 (-)
LOC118964492 NA coding upstream 228676 34296687 ~ 34302605 (-)
LOC110521742 LOC105022204 coding upstream 391417 34459428 ~ 34466711 (-)
LOC110521764 LOC106573421 coding upstream 405957 34473968 ~ 34490179 (-)
cpt1 cpt1 coding upstream 579374 34647385 ~ 34660153 (-)
G35982 NA non-coding downstream 496 33973506 ~ 33973779 (-)
G35969 LOC106573441 non-coding downstream 3508 33969190 ~ 33970767 (-)
G35979 NA non-coding downstream 5926 33968057 ~ 33968349 (-)
G35968 NA non-coding downstream 18807 33954501 ~ 33955468 (-)
G35966 NA non-coding downstream 31303 33942726 ~ 33942972 (-)
G36028 NA non-coding upstream 15894 34083905 ~ 34084325 (-)
G36030 NA non-coding upstream 18077 34086088 ~ 34086337 (-)
G36045 NA non-coding upstream 46809 34114820 ~ 34115042 (-)
G36050 NA non-coding upstream 57246 34125257 ~ 34125468 (-)
G36055 NA non-coding upstream 69744 34137755 ~ 34139621 (-)
G35628 NA other downstream 106230 33867558 ~ 33868045 (-)
G35299 NA other downstream 521862 33442368 ~ 33452413 (-)
G35075 LOC106573452 other downstream 865778 33107119 ~ 33108497 (-)
G33386 NA other downstream 1988125 31984771 ~ 31989249 (-)
LOC110521048 LOC100194695 other downstream 2529326 31426123 ~ 31444964 (-)
G36141 NA other upstream 209689 34277700 ~ 34362736 (-)
G36196 NA other upstream 273551 34341562 ~ 34381232 (-)
G37310 LOC106573403 other upstream 1205698 35273709 ~ 35278005 (-)
G37907 NA other upstream 1372907 35440918 ~ 35441328 (-)
G37976 NA other upstream 1515281 35583292 ~ 35583608 (-)

Expression


Co-expression Network