G38044



Basic Information


Item Value
gene id G38044
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35720235 ~ 35720521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU43027
CTAGCCTGGTACATGTATGGCATGACAAGAGTCAGAGGAGCTGGCTAAAACAcatatagatctgggaccagtctaccCTACACCCCAATCCTAACAGTAACCATTAAAGGGGTTGAGAATTATCTGATCCTCTACCAGTGGTTATAGGGTCAACTTCAACCTTATCCTGAGTTACTGTGCACAATGACAGCAGCCACATGACTACTgtgttcagtcagtcagcttCCTCTGCTAAATGGTATGAATACTTTATCTACTTCCTCAGAGTCAGATGacctcatggatac

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU43027 True 287 lncRNA 0.39 1 35720235 35720521

Neighbor


gene id symbol gene type direction distance location
LOC110532260 NA coding downstream 25459 35433794 ~ 35694776 (-)
LOC110520384 LOC106573404 coding downstream 404043 35313953 ~ 35316192 (-)
odf3b odf3b coding downstream 432783 35286541 ~ 35287452 (-)
LOC110521966 rabl2a coding downstream 434418 35281285 ~ 35285817 (-)
LOC118947385 NA coding downstream 851940 34856461 ~ 34868295 (-)
LOC110522006 LOC106573384 coding upstream 22129 35742650 ~ 35749599 (-)
LOC110521997 LOC100196677 coding upstream 29784 35750305 ~ 35753348 (-)
LOC110522154 LOC105022174 coding upstream 171986 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 219221 35939742 ~ 35961413 (-)
armc10 armc10 coding upstream 250810 35971331 ~ 35982887 (-)
G38010 NA non-coding downstream 13475 35647749 ~ 35706760 (-)
G37996 NA non-coding downstream 102665 35617356 ~ 35617570 (-)
G37993 NA non-coding downstream 106583 35613444 ~ 35613652 (-)
G37986 NA non-coding downstream 121680 35598313 ~ 35598555 (-)
G37982 NA non-coding downstream 127322 35592707 ~ 35592913 (-)
G38046 LOC106573386 non-coding upstream 3297 35723818 ~ 35724185 (-)
G38047 LOC106573386 non-coding upstream 3787 35724308 ~ 35726101 (-)
G38049 NA non-coding upstream 11821 35732342 ~ 35732680 (-)
G38050 NA non-coding upstream 14255 35734776 ~ 35734989 (-)
G38059 NA non-coding upstream 21765 35742286 ~ 35742503 (-)
G37976 NA other downstream 136627 35583292 ~ 35583608 (-)
G37907 NA other downstream 278907 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 442230 35273709 ~ 35278005 (-)
G36196 NA other downstream 1339003 34341562 ~ 34381232 (-)
G36141 NA other downstream 1357499 34277700 ~ 34362736 (-)
G38045 LOC106573386 other upstream 919 35721440 ~ 35722056 (-)
LOC110522187 LOC106573361 other upstream 649573 36370091 ~ 36409064 (-)
G38855 NA other upstream 788017 36508538 ~ 36510829 (-)
G40079 NA other upstream 1996019 37716540 ~ 37717033 (-)
G40732 NA other upstream 2404759 38125280 ~ 38125725 (-)

Expression



Co-expression Network