G38047 (LOC106573386)


Basic Information

Item Value
gene id G38047
gene name LOC106573386
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35724308 ~ 35726101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU43035
CCTGCTGAGGGGGATTGATGGAGGCTGTGGTCCCCCCTACTGTGGAGCTCTGGTCCTGGAAGGACATGGGCTCTGCTGGGTCAGACCGGGCCACCCCTACCCTGATCCCGACCATGGTGGGctgggagaacaggaggggagcAGGGGTGTCCTGGGGGTGAGGGGTGCTGCTGCCCATAGAGAGGCCCTGGGTACTGAAGAGGAGGGTTGGAGGCAGAGCCTGGGGGTTGAGGGAGGCGGTGCAGAGGAGCAGGTCTGTGGGCTGGGGCTGAGGGTGTTGGCTGGAGGACAGAGTGTTAGTTTGTAACAAGGAGCCTTGCTGAGCCATGGGAAGCTGCTGCTGGGTTTGCTGTGGTTGTGTCTGCTGGGGGGACTGCTGTTGGTCCATGGGGGTGCTCTGCTGCTGCTGGGTCTGAGACTGGAACACTGACACAGTCTGGGGATCACTGGCTGAAGTCTCCATGGAGGACAGGAATGCTAGCTGCTGCTGACTACCCTGGCTAGAGAGAGTGTTGGGAGAGAGGAACAGCGTGGACCCCGTGACCTGCTGCTCATTATCTCTGCTACCACTGGTCAGCACAGTGAGAGTGTTCTGGAGCAGGGCGGCCTGGACCTGGTGCTGCGGGCTGGGGGATTCCGACAGAGGCCTGGGGGACTGGAGGAGCTGCTGTGGGGGGGAGGTGTGGGAGGGCGGCTGGTGGGGGAAGCTGGAGGTCTGGATGTTGAGCAGCTCCCCAGCCTGCTGGAGGAGAGACACAGGCTGCTGCTGGGGATGAGACGAGGAGTGGATCTGGGGCTGGAGGAGCTCAGCCTGGAGCTGCTGCTGAAAGTTCTCCAacacctgctgctgctgctgctgctgttgttgttgttgtaagtgTTGCATGCTGCCTACTGCTTGGTTTTGTTGTTGTAGGTTGCCTAGtacttgttgttgttgctgaAGTTGTTGATCCGGTAGCTGTATGTTTCCTAggacctgctgctgctgttgttgttgaaacTGTTGATGTTGTAATTGTTGCTGTTGTAGGTTCCCCAGTATCTGTTGTTGCTGTTGCAGTTGTTGATCCTGTGGCTGTATTAATAATTGTGGTTGTAGCTGTATGTTGCCAAGGACTTGATGCTGCTGTATCTGCTGtatctgttgttgctgctgtatctgttgttgctgctgtatcTGTTGCATGTTGCCAAGGATCTGCTGTTGTTGCAACTGCTGTTGTGTGGCCAGAGAGCCCTCAGTGCACCCCAGTCTCAGGCTGTTCATGGTGTCCTGTACGTTTTGCTGCAGGGAGTCAGTGGAGGACGCGGGGCTGTACAACACTGAGTTGAGTTGCTGCTGAGCCACTGCTGCCTCTAGGACCTGCTGTACCAGGCTGCTGCCCCCTGCCTGGAGCTCCCTTACTGCCCTCTCCAGCTGGGCCACCCCATCCTGGGGAAACAGGGGAACTTGGGGGGCCTGGGAGGGGGGCGCCATCTGGGACATTCCTACTACCATCATCCCGCTGCAGGAGTTGGAGGCCTCTTGAGGCAGGCTCTCCTGGGGGTCCCGGAGGAACTGCTGGGGTACCTCTGGGGGGACAGGGGGGAGGGTGGTAGTGTCACTGGAGACGGGGAAGGAGGTGATGGGGGCGATGTCCTGCTTCTGGATGGTGCTGAAGGGCTCCAGGGAGGGAAAGACAGGGGCATGGGGGAGGTCCATGTCCCCAGGCTGGAGGGGCATAGGGCCGGGGAAGGACTCTTTCCTAGGCGGGGTGCTGGAGCTCAGCTCAAGGGTCTGCTGGACTAAGA
>TU43034
CCTGCTGAGGGGGATTGATGGAGGCTGTGGTCCCCCCTACTGTGGAGCTCTGGTCCTGGAAGGACATGGGCTCTGCTGGGTCAGACCGGGCCACCCCTACCCTGATCCCGACCATGGTGGGctgggagaacaggaggggagcAGGGGTGTCCTGGGGGTGAGGGGTGCTGCTGCCCATAGAGAGGCCCTGGGTACTGAAGAGGAGGGTTGGAGGCAGAGCCTGGGGGTTGAGGGAGGCGGTGCAGAGGAGCAGGTCTGTGGGCTGGGGCTGAGGGTGTTGGCTGGAGGACAGAGTGTTAGTTTGTAACAAGGAGCCTTGCTGAGCCATGGGAAGCTGCTGCTGGGTTTGCTGTGGTTGTGTCTGCTGGGGGGACTGCTGTTGGTCCATGGGGGTGCTCTGCTGCTGCTGGGTCTGAGACTGGAACACTGACACAGTCTGGGGATCACTGGCTGAAGTCTCCATGGAGGACAGGAATGCTAGCTGCTGCTGACTACCCTGGCTAGAGAGAGTGTTGGGAGAGAGGAACAGCGTGGACCCCGTGACCTGCTGCTCATTATCTCTGCTACCACTGGTCAGCACAGTGAGAGTGTTCTGGAGCAGGGCGGCCTGGACCTGGTGCTGCGGGCTGGGGGATTCCGACAGAGGCCTGGGGGACTGGAGGAGCTGCTGTGGGGGGGAGGTGTGGGAGGGCGGCTGGTGGGGGAAGCTGGAGGTCTGGATGTTGAGCAGCTCCCCAGCCTGCTGGAGGAGAGACACAGGCTGCTGCTGGGGATGAGACGAGGAGTGGATCTGGGGCTGGAGGAGCTCAGCCTGGAGCTGCTGCTGAAAGTTCTCCAacacctgctgctgctgctgctgctgttgttgttgttgtaagtgTTGCATGCTGCCTACTGCTTGGTTTTGTTGTTGTAGGTTGCCTAGtacttgttgttgttgctgaAGTTGTTGATCCGGTAGCTGTATGTTTCCTAggacctgctgctgctgttgttgttgaaacTGTTGATGTTGTAATTGTTGCTGTTGTAGGTTCCCCAGTATCTGTTGTTGCTGTTGCAGTTGTTGATCCTGTGGCTGTATTAATAATTGTGGTTGTAGCTGTATGTTGCCAAGGACTTGATGCTGCTGTATCTGCTGtatctgttgttgctgctgtatctgttgttgctgctgtatcTGTTGCATGTTGCCAAGGATCTGCTGTTGTTGCAACTGCTGTTGTGTGGCCAGAGAGCCCTCAGTGCACCCCAGTCTCAGGCTGTTCATGGTGTCCTGTACGTTTTGCTGCAGGGAGTCAGTGGAGGACGCGGGGCTGTACAACACTGAGTTGAGTTGCTGCTGAGCCACTGCTGCCTCTAGGACCTGCTGTACCAGGCTGCTGCCCCCTGCCTGGAGCTCCCTTACTGCCCTCTCCAGCTGGGC

Function

NR:

description
nuclear factor of activated T-cells 5-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43035 False 1794 lncRNA 0.46 1 35724308 35726101
TU43034 True 1426 lncRNA 0.37 1 35724676 35726101

Neighbor

gene id symbol gene type direction distance location
LOC110532260 NA coding downstream 29532 35433794 ~ 35694776 (-)
LOC110520384 LOC106573404 coding downstream 408116 35313953 ~ 35316192 (-)
odf3b odf3b coding downstream 436856 35286541 ~ 35287452 (-)
LOC110521966 rabl2a coding downstream 438491 35281285 ~ 35285817 (-)
LOC118947385 NA coding downstream 856013 34856461 ~ 34868295 (-)
LOC110522006 LOC106573384 coding upstream 16549 35742650 ~ 35749599 (-)
LOC110521997 LOC100196677 coding upstream 24204 35750305 ~ 35753348 (-)
LOC110522154 LOC105022174 coding upstream 166406 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 213641 35939742 ~ 35961413 (-)
armc10 armc10 coding upstream 245230 35971331 ~ 35982887 (-)
G38046 LOC106573386 non-coding downstream 123 35723818 ~ 35724185 (-)
G38044 NA non-coding downstream 3787 35720235 ~ 35720521 (-)
G38010 NA non-coding downstream 17548 35647749 ~ 35706760 (-)
G37996 NA non-coding downstream 106738 35617356 ~ 35617570 (-)
G37993 NA non-coding downstream 110656 35613444 ~ 35613652 (-)
G38049 NA non-coding upstream 6241 35732342 ~ 35732680 (-)
G38050 NA non-coding upstream 8675 35734776 ~ 35734989 (-)
G38059 NA non-coding upstream 16185 35742286 ~ 35742503 (-)
G38126 NA non-coding upstream 136724 35862825 ~ 35863462 (-)
G38139 LOC106573381 non-coding upstream 162486 35888587 ~ 35891659 (-)
G38045 LOC106573386 other downstream 2252 35721440 ~ 35722056 (-)
G37976 NA other downstream 140700 35583292 ~ 35583608 (-)
G37907 NA other downstream 282980 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 446303 35273709 ~ 35278005 (-)
G36196 NA other downstream 1343076 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 643993 36370091 ~ 36409064 (-)
G38855 NA other upstream 782437 36508538 ~ 36510829 (-)
G40079 NA other upstream 1990439 37716540 ~ 37717033 (-)
G40732 NA other upstream 2399179 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2461387 38187488 ~ 38191736 (-)

Expression


Co-expression Network