G38049



Basic Information


Item Value
gene id G38049
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35732342 ~ 35732680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU43040
aaaaaatatgtctgAAGAAAGacaccacatggaaaaagtggtaagcaagttaggtccaaGCCAAATAATTGTGTTGTGTTGGAGGTTTTATGATGCTTGTATTTAAATCAAAGTAGATActttaagattgttctatacatcagttggggttgtaagctacaatatgaggtcctaaacataGCATGAAAGCGGCTtccttgtagctgtgtgtgcTAATATAGTCAATGTTTGCCTTGGTGTAAGTTGAGCCAACAATCATGGGGTAAGTCTagcaaattgaagtgttttcttctCACATGTAATGCAATGTATTATTGCTGGGATATGTTAAAGTGTACA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU43040 True 339 lncRNA 0.36 1 35732342 35732680

Neighbor


gene id symbol gene type direction distance location
LOC110532260 NA coding downstream 37566 35433794 ~ 35694776 (-)
LOC110520384 LOC106573404 coding downstream 416150 35313953 ~ 35316192 (-)
odf3b odf3b coding downstream 444890 35286541 ~ 35287452 (-)
LOC110521966 rabl2a coding downstream 446525 35281285 ~ 35285817 (-)
LOC118947385 NA coding downstream 864047 34856461 ~ 34868295 (-)
LOC110522006 LOC106573384 coding upstream 9970 35742650 ~ 35749599 (-)
LOC110521997 LOC100196677 coding upstream 17625 35750305 ~ 35753348 (-)
LOC110522154 LOC105022174 coding upstream 159827 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 207062 35939742 ~ 35961413 (-)
armc10 armc10 coding upstream 238651 35971331 ~ 35982887 (-)
G38047 LOC106573386 non-coding downstream 6241 35724308 ~ 35726101 (-)
G38046 LOC106573386 non-coding downstream 8157 35723818 ~ 35724185 (-)
G38044 NA non-coding downstream 11821 35720235 ~ 35720521 (-)
G38010 NA non-coding downstream 25582 35647749 ~ 35706760 (-)
G37996 NA non-coding downstream 114772 35617356 ~ 35617570 (-)
G38050 NA non-coding upstream 2096 35734776 ~ 35734989 (-)
G38059 NA non-coding upstream 9606 35742286 ~ 35742503 (-)
G38126 NA non-coding upstream 130145 35862825 ~ 35863462 (-)
G38139 LOC106573381 non-coding upstream 155907 35888587 ~ 35891659 (-)
G38045 LOC106573386 other downstream 10286 35721440 ~ 35722056 (-)
G37976 NA other downstream 148734 35583292 ~ 35583608 (-)
G37907 NA other downstream 291014 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 454337 35273709 ~ 35278005 (-)
G36196 NA other downstream 1351110 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 637414 36370091 ~ 36409064 (-)
G38855 NA other upstream 775858 36508538 ~ 36510829 (-)
G40079 NA other upstream 1983860 37716540 ~ 37717033 (-)
G40732 NA other upstream 2392600 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2454808 38187488 ~ 38191736 (-)

Expression



Co-expression Network