G38139 (LOC106573381)


Basic Information

Item Value
gene id G38139
gene name LOC106573381
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35888587 ~ 35891659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU43138
tttacataaatatatattacattataggcCTACAAGCAAAAGATTAACTAGAGCAGGTAGAAACATGATTTCACAGAATGtgtctttgttttgtttttcatttgttgtgggggaaggggggggggtagtggttatgtactgtaggtaggctaGGTTAGGCGTGAGGTAGAGCGGGCAGACTTTGGGGTTAGACTGGGTATCTGCAATGGAAAGGGCTGAGTTCCTCTAAAGTCAAAAGGATGTAGAGAGATGACCCGTCATTACTAAAATGTGCAGTAGGTCTCTGTGGTAAACCTGTGTCAGCATGGGGACCATCTGTTTACAATTAGCTGGGTGACTTTTATTTGTCATTTCTGTCCTGTGGCAGAAGATGGCTCAATGACAGACAGGTTATAAGGTGATTGTGGCTGGGACTCAGCTTAAAAGAAGATAAAATAGCTATCATTATCGAAATATTACCCTTCGTGTCCCCCCGCCTCCAGCGCACAGCCATCTGCCCGCTCATTAGGCGGGATTAGGCTAGATTGACGAGGGCGGCAACAATACATAaaacctcacataattctgccccaaaacaatgacaatttctctcaaccagtggcatatgGGATATTTAGGTGATCGCTGATTCCGCCCTGtgataagcagtgcccactttgtcaaaggtAGGGGCGAACAATATGTTGCTTCCTCATTCCCAGCGtgcctctccagggtgctgttggagagactCATCGCTGCGGCACTCCACCAACGTTCCGTCAAAAAAATAATCTAACATAAATCATGTAGCAGATATAGGACATGGTAGATAGGGTATGTAGCCATTTATGTAGGCCAAAGAATGGAGATAAAATGTAAGACAATGTAATGAGAAGGGCACTTTTTTACATCATGCAGGTTTCtccgatcaaatagcctaactAACCTAAATGGtgctaaatcaaataaaatatgtGCTGTAATTTTAACAAACAAcatatcctaaaaacaggacaggtcaaaCAAAGTAAAATGGACAAAATGGAATGGACAATCACAGCTGTTGTCCAGGAGTTTCACCTCTTTGTCATGATCAATGGTTTAAAGTTTGTATCTGTACAAGCTGATCACagtgaaaaataaaatacttcTGCTTTCCCCGCcgtgtaaacacattgcaaacaGGCTCACGataactcctgataaagttgAGTAGCTGATATACAGAGCTTAAATAGccaaattgattagtcacaggTATCATAACTAATTAAACCAATGCATCGGCTTGTTTTACAAACGGTGGTCCTACCACATGAATGGGCATTTATAAAATTCCATTGTGGCTGACATGGTAGGCTACACCCCAGTAAGCACGAGCCAACGTCTTTTGGATgtctttttttaattttaaagGGTAGGTTTACCACATAGATGGACATTCATAAAATTATATTTCCTCCTCATATTACCTCAGTAAGCAATGACCGACGGCGACGCCTTTTGGACATATTTTTTTGGTGCAGTCTGGACCAGCCTTGAATGCCACAGACATTGGTTTTTGGTCCggtccagaccaaatctgaactaatcatagacatctatgtttggttcagatttgatTTCAACGTCCACAGACATACATTTAtggaccagccttgatttgagccaaacatagacgtctataaaTGACCTCTTTTCAACTTTAATAACCTACATTTACCCTAACTTCAACGTCTAGAAAATACCTATGTTCAATGTCATTTTGCTTACGGGGATTATTCTAGTTTTGCAGGGGGCAGCATTTTTTGGTTTCACCTAGGGCGGCAGAACCGAAAGGACCAGCTCCAGGGTACTTTTTTCTCACCTCCCCAAACTGCTTAAAGTGGGATCAGATCGACATGGCATTGTCCAATGAGGTTGTAGAGTAAGCCCAAGCACGCGCATGTCTTTGTGCACAGCTGCAGGGGCTCGAGAGCAATTACgcgatgacatagtacacaactTTTATGGAGCGCCTTTAACATACAGCGCTTCTAAAATGTTTACTTCTCTTTAAATATTTCATACTGGCCAGCAACAGCACAAAATTATCCCAAGCATCTTGTTTTTACCCCAAATGTTTATTCTAAAGAAGGCTTTTAAATAGCAAtaattaaaataataaaacatacaacattCTGGCTTAATAGGTAGGCAATTTACATTATCAATGGTATAATTATTAAAAACATAACAGAGACTTCTAAAtcctttaaaaatgtatttaacctgatttaaaaatatatttttcaaaaccTCCAGTTATTTCCTTATAGAAACACTGTCTTAAATATTCTGCACCTGTGTTTTTGCTCTTCCATGAACCCAAGTGAAAAAAGCTCCAGAATAGTAAAAGCTCTACAACACAGTGTTTAGTTCTAGGTAGTTTCAACAGTACTGTCACTAGTAGGATCACTAGTAGCTCTTCTAGGTCTATAAGTGCATCTTGGCTGATTCAAGTCCTTTCAGTTCagtggttggttggctggctatTGGTTGCTTCCAAACCCTTCCAGACcatagagggagaaagggaggacaTGTGACTGCTCATTGTATTCATCCCAAAGTCTACGATTGGTTAAAGTGTGTCCCAATATTATGCCATACCCTTATGTAGCTATGTCCCCTAGCTTTTAGACTACCAGTCTTGTGAGTCTGTGAGTCTGACCACACGACAAAGTCTAGGAGAGTGGCATGTGAGGTTACAGGGCCtgtcctccttttctccctcctccctttctatcATCCTGTCTTCCTTCCCAGTCCAGAGCTCTCTTCCCCCTCTGCCCCCTCTGACTGGGAACCAATTCAGtgtcctctctcactccatcaGTCATCGGTCgtcggtctgtctgtcggtctgcagCGGGGCAGGGGGTCACCGGGGAGGGGCGACCTTTGGCCTGCCCCTTGCCCCAGTGCACGTTGGGAATGGTCAGACACTTCCTGAAGTGCTCCAGCTGAGcctgcagcctctctctctcatctctcaccctctgtctctgactcaccagctcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43138 True 3045 lncRNA 0.43 2 35888587 35891659

Neighbor

gene id symbol gene type direction distance location
LOC110521997 LOC100196677 coding downstream 135239 35750305 ~ 35753348 (-)
LOC110522006 LOC106573384 coding downstream 138988 35742650 ~ 35749599 (-)
LOC110532260 NA coding downstream 193811 35433794 ~ 35694776 (-)
LOC110520384 LOC106573404 coding downstream 572395 35313953 ~ 35316192 (-)
odf3b odf3b coding downstream 601135 35286541 ~ 35287452 (-)
LOC110522154 LOC105022174 coding upstream 848 35892507 ~ 35914512 (-)
cax2 LOC106573379 coding upstream 48083 35939742 ~ 35961413 (-)
armc10 armc10 coding upstream 79672 35971331 ~ 35982887 (-)
LOC110522092 lrrc17 coding upstream 113843 36005053 ~ 36045196 (-)
fam185a fam185a coding upstream 145878 36037537 ~ 36047583 (-)
G38126 NA non-coding downstream 25125 35862825 ~ 35863462 (-)
G38059 NA non-coding downstream 146084 35742286 ~ 35742503 (-)
G38050 NA non-coding downstream 153598 35734776 ~ 35734989 (-)
G38049 NA non-coding downstream 155907 35732342 ~ 35732680 (-)
G38047 LOC106573386 non-coding downstream 162486 35724308 ~ 35726101 (-)
G38147 NA non-coding upstream 50701 35942360 ~ 35942604 (-)
G38119 NA non-coding upstream 51027 35942686 ~ 35943267 (-)
G38224 NA non-coding upstream 214945 36106604 ~ 36107897 (-)
G38045 LOC106573386 other downstream 166531 35721440 ~ 35722056 (-)
G37976 NA other downstream 304979 35583292 ~ 35583608 (-)
G37907 NA other downstream 447259 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 610582 35273709 ~ 35278005 (-)
G36196 NA other downstream 1507355 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 478435 36370091 ~ 36409064 (-)
G38855 NA other upstream 616879 36508538 ~ 36510829 (-)
G40079 NA other upstream 1824881 37716540 ~ 37717033 (-)
G40732 NA other upstream 2233621 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2295829 38187488 ~ 38191736 (-)

Expression


Co-expression Network