G38223


Basic Information

Item Value
gene id G38223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36226702 ~ 36231191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU43239
atAGGATATGTTTATTTACATACATACAAAATGCAAATACTCAAACGTGTCTGTTTTGCTTtaattttacatacattttttcatCATTAACACAGACAGAAGGCAGTACATTTCTTTAACAAATGCAAaagaaagtaaaaaaaataaaacaagaaCCATGACTTTAGAAGTAGCCCCTTTAACAGCACTGTGTTCCTGAATGAAGAGTTGAAAACAAAGTTATCACAGACTGGTGAGTCCACAGACATTAAGGCAAGGGCAGGGATACACAGGCTAGGGCCCTGTTGCAACTTTTTTGAAATACTTTTTTTCCTCCTTCGTGAAATAAAACTGTTCTCATGACGTGGATAGGTGAAAGCTGACCAGTGAAACCCTTTGCTTTTACCTCTACGATTTTATCAGGTCAGTAATGACTTCTGGAAAGGGAGATGACCATAGAGAGTACTTTAGAATCACATCCTGGTTTATGGACAAGGGGCAGGATAAGAGAACCTAAACAGTAGCCTAGTCTCCAACTCTGGTCCTGGAGACCAAGCTTATTTGTAACTTATCATTGTTCAACCATGGACAGAGCAGTTCTAAATGCCAGAGACTGGCAGCGTGCTCTGTAAATCAGGCCACTGAATATCAGGAGAACCATGGTTGGAGACCGTTCTGTCCTAAACGGTCAGACTACTGTGTGAGACATGTGGAGAACAGGGGAACACAGTCTAGGGGGCGTCATTCCCACAAACATCTCGGATATATGAAATAACTAAACACTGGAACCTCAGGGTAATACGTTTACATCATGTGGAAAAAGTATACATAAAAAATTCAAGAAATATacataaatgaaataaaataaaaagtactcTCCCTCTACACAGTCACAGTTTGAAAACATTTGAAGTTTACATGTAATTTGACATTtataaaagtgtttttttttttagaaatatttcTCCAGTTTTAGCTGAAGACACTAGAATGGTCTGCCATTTTGTTCAGAGAGCCTTGCTCCTCACGATTCTGTGCAAACATTCAATGCATATATATCCATATggtcaacatcatacttttatatgtatatatatttatagaacATGACTTTCTGCAATTTATGGCAGTATGGTCATATCTTTTGTCTTCAGACaaattgagacacacacacacacaaaatagacAACTAACTGCACTGCTTTTAGCTTCTcactttgttttttttacagaattcacaacatcTTTCACTGGGTTACATTTATGTAGTCACTACTAGGGTTGAACGGTGGGAACCCGGTTACCGGGATTTACCTCTAAAAATCACTCGCTTTTCCCTGGGATAAATAACTGCGAGAAACTGGTaaattataatacattatttatatgaacagcatggtgtgaaatggaactgttataTTATATGCTATAtctaaatctggcttctctaCGGCCTCTGCATGAATCAgcgctcagggtggggacagacagcccatctcagtatggagcaCAGTTCATAATAcatgtagacctatcatctcaACTTTTTGTTCTTGTGACAGGTGGGactacatttgctgcagcatggcctatgttacagtaatataaagatCTAATGCACgtctaatttacccatctccTTCTGGCTTTCGGGGGTCTTGTTTTTTCTCTGTCGCTCTCCATCAACTCCATCCAAAATAGATAATCCTGTTCTAGATTGATATATATCCCTATATATATAGAGATGTTCTAGCCTATCTTCTACGGGTAATACGttcaatgcagtattagccttatatttagctaattaatgatgggttatgcataATAAGCTTCTAACTTATAGCCTCTGTCTCTTATCCAATACGCAAGCACCTGTGCTCCGCTGACCTCTATCCTTAAAAAAAACActccttagctcttggagtcccatgcaggaaaagctagacCAGAATAGCTTGCTGGataatttttttaaaacattttttataccAATAGACTATTTGAAGAGGGATGCCTTCTCTTTTTAGCTGAATGTTATACACAGAAGTCAATAGAACTCATGGGTAATTTGAAAGATGAGTGAACTCGCGATGgcggtaggctatagcagttatttatttagacccataaccattcaatcttTGTGAAGCGAAGTGAAAGCCTGTTGCATCTAattctagtcctatattattcaagGATGTCATTAGAGTAATGAAGATAAGGACAACGAAACGCATTTAATTTAATTGTTGAAAGCACggaaagaatgagagaaagaggaaaacaaCCAGGGTATATAAACAGGTAGGTATAGAAATATGTCAGCCTACTAATTACACAAATAGGCCCAATTATATTTCAAAATTAAAATCAAATTCGCTTTCAATGACGTGCCTAATTCCAGTccatataatacaatacagtccACAGTCAAAAATATTCGCCTACTGGAGCTAGTTTCATTTATTTACCCAAGAGCGCATAGGCTATAGCTGGCTACATCTAAGGGCTTCTATGTTTTTCTGTCACGCATAATGTGCAGTAGCATTTATCATACATGTATTGGATAATGGCATAATCATTTGGGCATTTTTGGGCTTAGGCTCATTAAATGttgttaatgtagggctcataaatgtttttaaaatatatggctcatcaggctcaggtagaTTCAGGTTAGAATGTTCATGCTgatcaaagctctaatcaaatccaaACATATATGCTTTATAATTATTTTGAATGAAACCTCTGGTTTTGGTGGGAAACACCAGGTTACCCAGGAGAAAAGGGATTTATTTTCGGGACGGAACATTTCTAAAACACcgggaaaatattcaaccctagTCACTACGTATTTAATGAGTCATTtacaaattgatttaaaaaaaggttCAAACCCACTGGGAAGGGACTTTCATATCCTTTTAAGTAGGATTCACTATCATTTCATTACACTCGGAAGCTTTGGAAAAATGCACAAAAGGGGCAACGTCAATCTCAGGGAACATAATTCAGTCATAAATTAAACAATGATAAGGTTTTACAAAGTCCTATCTATAGATCCTATGACTGGTAATCTCTTCATGTCTTATGTCAAGCTGTAGCACCAATAGAACTGAGGAATAAAAAGGTCCCTCATGTAGGTCCAGTATTGATCCCTTTGCACACTCAAAGGCCACTCTATCGTACTGTCcccaaatgacaccttattccatatagtgcactacagtgaagggtgctgaggggaggatggctcataataaggCCTGGAACGAAGTACATGGAATGGattcaaacacatggaaaccatgtttttgatgtatttgataccattcccctacagccattaccacgagcctgtcctcccccattaaggtgccaccaacctcctgtggtccacTACTAGAAGTGTACGTGGCTAAAATAAACTAACATTACATACCACATATTGAAGAGGGTGCTGTCTGCAAAACCATCTAAAACCAACCActgccttcctcccctccccccccccccagtccaaaTCCTTACTTGATGTAAAGCAGACACTGATGTCAATGGGAGATGCGTGTGGAAGTTCAAGTTAGGATATTGAGTTAGGATTCCTCCCTCTTATGTCTTAAGATACGTTCACAGAACATGCAGTAAGTCAGCCATAGATAAAGCCCCACAAGCCCTAAAACCcagctagtctctctctctctctctctctctctctcattgggtGGTTGAGGGGAAATGGGAAAAGTTTTGTTGTCCAGAAACTCATATAGGAGATTCTTAATGTCAAACataggaaataacacataatatatgctaaaatgtttttgtttaaaTGGTCACTGGTTTCTAAACATTTCCATGCCATGACTCCCCACCACTCAGAAAAAACACTGGTTTAGATACAAAGAGAAAACAACGGTTGTGTCAGTAGGGACAAAAACTCAGAAAACTTTGAAAAAAATGAAACAGGGAGGTGCTACCTTAACTTTGTTTTCTCTTTCAAAACGTTTTTGTGCGATGTgcactactgaacacaacccatgaCCAGCATGCATCTACATCCTTCCACCATTAGCCCACTGTGTGACTGTTCTTCATCagttaatcatcatcatcatcatcatctcctcAGGCTGGTGAATCTCCCCAGGAATGAGAATTGAGCATGTGGGGGTGTAGTATGATCGCTCAGTCCTCCCTCCGCCAAGATCACGTGTGGATAGATGGGAGGAAGGTTGTCTGAAGCTCATGCAGGGTCCTGGGGTCATCAGGGGGTGGTCTATAAAGGTGAGAGTTCAGCAGGACTCCTCCAGCGCGTTGACCACCTGCTCCAGGATGTCAGGGCAGTAGTCAGCGATCTGCTGCAGCACTGAGTTGGCATACTCCTGCAGCTCCCCGCTCTCCTTCTCACACAACTCCAACTCCA

Function

NR:

description
ELKS/Rab6-interacting/CAST family member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43239 True 4417 lncRNA 0.40 2 36226702 36231191

Neighbor

gene id symbol gene type direction distance location
LOC110522050 LOC106573365 coding downstream 36996 36141051 ~ 36189706 (-)
LOC110522098 LOC106573370 coding downstream 95321 36121670 ~ 36131381 (-)
tmem60 LOC106573373 coding downstream 105713 36119271 ~ 36120989 (-)
LOC110532269 LOC106573375 coding downstream 146273 36074950 ~ 36080429 (-)
LOC110522040 LOC106573374 coding downstream 155844 36066946 ~ 36070858 (-)
LOC110522124 fbxl14 coding upstream 296 36231487 ~ 36234308 (-)
LOC110522087 NA coding upstream 29997 36261188 ~ 36264106 (-)
LOC110522167 LOC106573363 coding upstream 59515 36290706 ~ 36322277 (-)
LOC110522187 LOC106573361 coding upstream 138900 36370091 ~ 36409064 (-)
LOC100750228 irf-7 coding upstream 308606 36539797 ~ 36550002 (-)
G38269 NA non-coding downstream 35135 36191163 ~ 36191567 (-)
G38229 NA non-coding downstream 117830 36108398 ~ 36108872 (-)
G38224 NA non-coding downstream 118805 36106604 ~ 36107897 (-)
LOC110522092 lrrc17 non-coding downstream 181506 36005053 ~ 36045196 (-)
G38119 NA non-coding downstream 283435 35942686 ~ 35943267 (-)
G38314 NA non-coding upstream 49157 36280348 ~ 36281267 (-)
G38345 NA non-coding upstream 100968 36332159 ~ 36333002 (-)
G38369 NA non-coding upstream 130495 36361686 ~ 36361956 (-)
G38370 NA non-coding upstream 131023 36362214 ~ 36362415 (-)
G38045 LOC106573386 other downstream 504646 35721440 ~ 35722056 (-)
G37976 NA other downstream 643094 35583292 ~ 35583608 (-)
G37907 NA other downstream 785374 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 948697 35273709 ~ 35278005 (-)
G36196 NA other downstream 1845470 34341562 ~ 34381232 (-)
G38855 NA other upstream 277347 36508538 ~ 36510829 (-)
G40079 NA other upstream 1485349 37716540 ~ 37717033 (-)
G40732 NA other upstream 1894089 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1956297 38187488 ~ 38191736 (-)

Expression


Co-expression Network