G38427


Basic Information

Item Value
gene id G38427
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36425609 ~ 36459705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU43459
atacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcacTGTATATATAGGTGTAATCTAGAGCCAAGCCTGTTGATTTTTAATCTGAGGGCATCCTGCTATTGACACACGTTGAATTTTGCAACAACAACCGCAATTAATGAAGCAGTCTAGACAGCTAGGTCTAGACAGCTCAGGTGAGTGCAGtaggtctagacagagcaggtgagtgcagtaggtctagacagagcaggtgagtgcagtacgtctagacagagcaggtgagtgcagtaggtctagacagagcaggtgagtgcagtaGGTACAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43459 True 355 lncRNA 0.46 4 36425609 36459705

Neighbor

gene id symbol gene type direction distance location
lrrn2 LOC106573362 coding upstream 72358 36349054 ~ 36353251 (+)
LOC110522068 erc1 coding upstream 194413 36200301 ~ 36231196 (+)
rad52 rad52 coding upstream 284669 36133477 ~ 36140940 (+)
LOC110522059 LOC106573371 coding upstream 309172 36087136 ~ 36116437 (+)
LOC110522113 LOC106573380 coding upstream 486929 35922982 ~ 35938680 (+)
phrf1 LOC106573357 coding downstream 59141 36518846 ~ 36538338 (+)
LOC110522265 LOC106573356 coding downstream 95042 36554747 ~ 36560454 (+)
LOC110522315 LOC106573352 coding downstream 611915 37071620 ~ 37129381 (+)
LOC110522323 LOC106573351 coding downstream 693768 37153473 ~ 37196648 (+)
LOC110522363 NA coding downstream 1334737 37794442 ~ 37849251 (+)
G38382 NA non-coding upstream 49566 36374943 ~ 36376043 (+)
G38380 NA non-coding upstream 52283 36370100 ~ 36373326 (+)
G38373 NA non-coding upstream 62204 36363143 ~ 36363405 (+)
G37777 NA non-coding upstream 156204 36266306 ~ 36269405 (+)
G38451 NA non-coding downstream 10 36459715 ~ 36459948 (+)
G38470 NA non-coding downstream 26512 36486217 ~ 36540658 (+)
G38468 NA non-coding downstream 89353 36549058 ~ 36582482 (+)
G38519 NA non-coding downstream 121691 36581396 ~ 36581833 (+)
G38512 LOC100194703 non-coding downstream 191040 36650745 ~ 36686249 (+)
G37719 LOC106573365 other upstream 281647 36141073 ~ 36143962 (+)
LOC110522073 LOC106573381 other upstream 534002 35815461 ~ 35891607 (+)
G37450 NA other upstream 833682 35591390 ~ 35591927 (+)
G38652 NA other downstream 382903 36842608 ~ 36883892 (+)
G40149 LOC100136012 other downstream 1311240 37770945 ~ 37771468 (+)
G40150 NA other downstream 1311949 37771654 ~ 37772145 (+)
LOC110522455 LOC106573334 other downstream 2941458 39401145 ~ 39403331 (+)
LOC110520525 LOC106573323 other downstream 3177183 39636888 ~ 39645220 (+)

Expression


Co-expression Network