G38470


Basic Information

Item Value
gene id G38470
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36486217 ~ 36540658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU43511
GTTTCTCATATCAGTGGAGGGGCTGTATAGGGCTGAGGCACGATAAGTAGCATTCTATTTTTCatcttcatttatttatttaaaaacattGCCTGCTGTATACTTTACAGTAGTGAATACAGTGTTTATCCAGTTAGGTCAGTTGTGGATGAGGTAGGTCTGAGGAAATATGAGTAAGCCTCTATTGTTGTCTTTATTAGCCACTAAAACTGGGCCTGCTACATAGTTCAGCTCTTCCCAAACTTGATTTCCTGCTGATGTCTGTCAAACTCCCACCTAAAACAGAGTTTTACCGCCCCACCAATTAAACAGAAGCAGATgggtcgttccacctcaaaaagcacaagaaagtggatttcgacacccaccatctcagattgttctgaaatcgttttttttttgtaGAAACAAGGCAAAGTTTATTGATCTTGTTTTGCAATACTATACAAAGTGCTTTTCAATGCCAGGGTGAAGTTTGCTCACTTTCAGTACAATAAAACAGATTTTTCAATACAAAAGAGAACAGACTGAAGGGTTGAGCGACCTAGACAGGTTTAAAGTGTGGCCCATAGGGACACAAGGGAATTCAGTAGAAGAGAAAATACCACTAAATGATACATGAACACATTACGAACACACAGCGATTTGatgtatatttaaatatatatacacacatcgtCAAGAGAAGGACAGCCTATACTACTGCATGACACAAATCATAGATCAGAATAATCTaacacagggctctccaaccctgttcctggagagctaccatcctgtaggttttcgctccaaccccagttgtaactaacctgagtcggcttatcaaccagctaattattcaAGTCTGGTGTGTTAGATTAGGGTTGAGTGAAAACCTataggactgtagctctccaggaacaatgTTGGAGAGCCCTGTTCTAACACCAACATTTGTTTGACTTTCAAAGATCTACATGTTTGAGTCGTACACAATTGCATTACATATCCACTTGCTAAGTATTTCTTTCCTTTTGGAAGATTCAATTAAGTGATACAGTAGTGAGGTACCAGTTCTAGATAAGGGCTGGTGATGTGGTACAATTGGTGGTCTAGAAGTACTGCCCCATGGCGTGCTGTGGGCCGTCGGGCCAGGTGGCATTGATGAGCTCCATCAGGCTGTTGTGGTGGGAGATCTGCAGGCTGATGTTGTCATTCTGGAGGGACGACGCCCCCTCCTCCTGGGCCACCTCGTGGAAGTAACGACAGATCAGGGGAAC

Function

NR:

description
interferon regulatory factor 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43511 True 1262 lncRNA 0.42 2 36486217 36540658

Neighbor

gene id symbol gene type direction distance location
LOC110522188 LOC106573360 coding upstream 52533 36409389 ~ 36433684 (+)
lrrn2 LOC106573362 coding upstream 132966 36349054 ~ 36353251 (+)
LOC110522068 erc1 coding upstream 255021 36200301 ~ 36231196 (+)
rad52 rad52 coding upstream 345277 36133477 ~ 36140940 (+)
LOC110522059 LOC106573371 coding upstream 369780 36087136 ~ 36116437 (+)
LOC110522265 LOC106573356 coding downstream 14089 36554747 ~ 36560454 (+)
LOC110522315 LOC106573352 coding downstream 530962 37071620 ~ 37129381 (+)
LOC110522323 LOC106573351 coding downstream 612815 37153473 ~ 37196648 (+)
LOC110522363 NA coding downstream 1253784 37794442 ~ 37849251 (+)
LOC110522368 LOC106573348 coding downstream 1503427 38044085 ~ 38191930 (+)
G38451 NA non-coding upstream 26269 36459715 ~ 36459948 (+)
G38427 NA non-coding upstream 26512 36425609 ~ 36459705 (+)
G38382 NA non-coding upstream 110174 36374943 ~ 36376043 (+)
G38380 NA non-coding upstream 112891 36370100 ~ 36373326 (+)
G38468 NA non-coding downstream 8400 36549058 ~ 36582482 (+)
G38519 NA non-coding downstream 40738 36581396 ~ 36581833 (+)
G38512 LOC100194703 non-coding downstream 110087 36650745 ~ 36686249 (+)
G38627 NA non-coding downstream 248131 36788789 ~ 36850098 (+)
G38763 NA non-coding downstream 416569 36957227 ~ 36957548 (+)
G37719 LOC106573365 other upstream 342255 36141073 ~ 36143962 (+)
LOC110522113 LOC106573380 other upstream 547550 35922982 ~ 35938680 (+)
LOC110522073 LOC106573381 other upstream 594610 35815461 ~ 35891607 (+)
G37450 NA other upstream 894290 35591390 ~ 35591927 (+)
G38652 NA other downstream 301950 36842608 ~ 36883892 (+)
G40149 LOC100136012 other downstream 1230287 37770945 ~ 37771468 (+)
G40150 NA other downstream 1230996 37771654 ~ 37772145 (+)
LOC110522455 LOC106573334 other downstream 2860505 39401145 ~ 39403331 (+)
LOC110520525 LOC106573323 other downstream 3096230 39636888 ~ 39645220 (+)

Expression


Co-expression Network