G38992


Basic Information

Item Value
gene id G38992
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36704524 ~ 36710705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU44076
GAGTTGTTTGCATTAGTGcataaagaggaagaggaagtagAAATGATGTGGACTGGAGCAGAGACCATTCCACTTGGTGCCTTGGAACACAAGCGTGTACATTTAAATAAGCATTTCGGATTATTCTCAAGTAAAAAcaaatctcaattgcatacaAGCATTTTTGTTGAACAATGTCTATTTTCAAAACGAGCCTCACAACACACAGAACTATGTGGCTGCTTGCAAAACAGTAAACACATAAATATATTCAGCAAGGCTAAATGAGACCGAAATAGCAAATTCATCAAAAGAAGACGACTTACTGCAAAAACATCCagacaaacatacagtgcattggggtattgtgtgtagatttatgaggggaaaatataatttcatccatttttagaataaggctgtaacataacaaaatgtggaaaaagtcaaggggtctgaatactttcccgaatgcactgtacatatagcTGACAAAACAGAAAGTGATTCTGTCTTTTAAAAATACCAGTTGGTCAATAGGTTTTCTTTGCAGTCACTACTACATCATGATGATCGAAACAGGAAATACAACTATCAAATGGTTCAGAATTATGGACAATTTCTCTCCTTTTATGCATACTTTACCAAACAATTTCATACATATCAAATCAAGTATTATTCATGAAAAACAAAGCACATTGTTTGCAGAATTCATTCACTGGTATCATCACAATCCAATTCCATGTATTCAATACACACGCTGTTCTGCTCATAGGTTTGTAGATTTTCCATTGGCAAGCAGAAACACAATCCCCAATAGATCTAAGGACAGGTGAATACAGTGGAGGAACACAACTGAATTTATAGGCGTCAGCCCTCACCAAACCAAAGGTGTGTAATATTGGAGATGACTTGTCTCATGAGTACTTAGAAGGAACTGAACTTCATTTTCTGCATCTCTGCATGTTGTAAACAACCATACATCTTAGGCTGTCCGCATTGCGTAGATCTTTCCCTATATTGTACCGGATTTACTATAAATAAAACCCTTGACTATTTTGTGCAGTAGTATTAACTGATTACCAGAAACAGGGAACACATTGCAACCTGTTCTCTTCTGATGAAAACAATGTGTTGACATTCTGTGAACAAAACACttaacagcaacaacaaaaaaatttaTGACAGTTGTACAAAggtacaaaaacaagaaaatgatcaGACAATCTACAAATGCATTTGATCATTGTTGTTTTGCTATACGGACATTTAACCACAGTTCCAAAAAAATGCTTGATTGAGAAAAACTATAAGAGCATTATTCAACCCAGTAAAAAAGTATTTGCTCAATTGACTCTCATGTAGTCACTGACAAAAATGATCAGACTTTTTCTCCTTGGTTTAGATAACATCATAACATCTCTGAATCAGGCTGTCCCTAGTCTTCCATGTCCCcgactctctccccttctctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44076 True 1455 lncRNA 0.36 2 36704524 36710705

Neighbor

gene id symbol gene type direction distance location
LOC118966750 NA coding downstream 63415 36641055 ~ 36641109 (-)
LOC100750228 irf-7 coding downstream 154522 36539797 ~ 36550002 (-)
LOC110522187 LOC106573361 coding downstream 295460 36370091 ~ 36409064 (-)
LOC110522167 LOC106573363 coding downstream 382247 36290706 ~ 36322277 (-)
LOC110522087 NA coding downstream 440418 36261188 ~ 36264106 (-)
ldlrad3 LOC106573355 coding upstream 2159 36712864 ~ 36827281 (-)
trim44 LOC106573354 coding upstream 173767 36884472 ~ 36952971 (-)
LOC110522309 LOC106573353 coding upstream 318180 37028885 ~ 37031653 (-)
LOC110522333 NA coding upstream 501715 37212420 ~ 37248824 (-)
pdhx pdhx coding upstream 576851 37287556 ~ 37347643 (-)
G38917 NA non-coding downstream 128346 36575041 ~ 36576178 (-)
G38875 NA non-coding downstream 202077 36494119 ~ 36502447 (-)
G38881 NA non-coding downstream 205324 36498720 ~ 36499200 (-)
G38374 NA non-coding downstream 341176 36363147 ~ 36363348 (-)
G38372 NA non-coding downstream 341430 36362820 ~ 36363094 (-)
G39030 NA non-coding upstream 51528 36762233 ~ 36789206 (-)
G39158 NA non-coding upstream 259743 36970448 ~ 36970664 (-)
G39194 NA non-coding upstream 289442 37000147 ~ 37000468 (-)
G39217 NA non-coding upstream 306587 37017292 ~ 37017552 (-)
G38855 NA other downstream 193695 36508538 ~ 36510829 (-)
G38045 LOC106573386 other downstream 982468 35721440 ~ 35722056 (-)
G37976 NA other downstream 1120916 35583292 ~ 35583608 (-)
G37907 NA other downstream 1263196 35440918 ~ 35441328 (-)
G40079 NA other upstream 1005835 37716540 ~ 37717033 (-)
G40732 NA other upstream 1414575 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1476783 38187488 ~ 38191736 (-)
G41868 NA other upstream 2311100 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 6328023 42852829 ~ 43129052 (-)

Expression


Co-expression Network