G40382


Basic Information

Item Value
gene id G40382
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37846941 ~ 37849317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU45523
AATATCAAATGATGTTTATTCAGGGAAGCGATTATATGTCAGTGAAAAAAAGTAAATAGTAAACACTTCAAAATGCATAGATGAATTTAATATAATGCAGGATACTGTTTACACATTTTGGTTATCCGAAGCCCATTACCGGTCGCCATTTAACATTTATCCAGAGTGCATGAAGCTTTACAGGCTCTGGAACTCACTTTTTGTgtatctgtacattactattcatatttttaacaacttCAACTtctactttactacattcctagtaaaaatattgtactttttactctacaCATTTTcgctgacacccaaaagtactcattaatAGCAGGACAAGAACATGGTcgaattcacacacttatcaagagaacatccctggtcatccctactgcctctgatctggcagactcactaaatgcaaatgctttgtttgtaaattatgtctgcatTTTTtactgtgcccctggctatctgtaaattgaaaaaaaaagaatTTGTGCcatttggtttgcttaatattagCAATCTGAAAATGTtatgcttttacttttgatacttaaatatattttttaattacatttacttttgattcaTACAGTAagtgtatttaaaaccaaatacttttagacttttacacaATTAGCATTTTATTGGGCGACTTTCACCTTTacgtgagtcattttctatgacgCCATCTTAACTTTTACTTGTCaggcaattgggtacttttcccaccactatTTGAGATACTCTTTAAAGTTTCAGAAGTTATCGGGAGATGGGCAGGGACTTCGCTGTCCTGACATTACGGTGAAAATTGTTCCATCATCGGCATGCTAGGACAGAGAATAGCTTTGACAAGGATGAGCGGGAACTGCCCTTCCAATAGGGTGgcagggccaagagaccagaggtggcagaacagagtgtttcagttggggtgtagggtttgaccaCAGTTCCCATTGCTGCTGCATAGGCAAGCACCAAGGTCTTGAAGATTAtgtgagcttcgactggaagccagtggagtgtgcagaaGAGCGTGGTggcatgggagaacttgggaaggttgaacaccaggcacCAGAGGTTTGAAGGCACAAGTGGGGAGCCCAgtcaacagagagttgcagtagtgTAGACGGGAAATGACAAGTGCCTAGATCAGTACCTGCtctgcttcctgtgtgaggaaagATTATACTCTACGGCTGTTGTAGAGCGTGAACCTGCAGGAGTGAATCACTgcttgatgtttgcagagaatgacagggtgttgtccagggtcacgccaaggttctttgcactctgggagggagACACCCTGGAGTTATCAACTGTGATGGAGATGTCTtggagcgggcaggccttccccaggaggaagagcagcttcatCGTGTTGAGATTGAGCCTGAGGTGGTGGGccaacatccaagctgagatgtcTGCCAAGTATGCAGAGATGTGTCACCACCTGGGTATCAGAAGTGGAGAAGGAGAAAAGAAGTTGAGCACCATCCACATACagtagcaatgataggagagaccatgtgaggatatcaAGAGCTTGGGATTATAAAGGTTCTATCCGCAAAAATATGATTCTGAGAAGGTTGGCGTTCATTTTCGAAACCCTCATTtgtttgaatggtgtcagcaatttttatattgtattattctgaacttaacaacatgaattagggtatttagagtactatataggtaGAGGACATTGAACTgaacaaggctatgtcaatagcaacattttgacaaaaatgcctatagaaccttatagtcccaaacTTTCGATATGACAGAGCTGAGTGCAGACAAAGATCCTCTGTTTGAAGCAAACTTCCAGGTAGAATGCAATACAgcagtgtgcagagcctgagatgtCCCGCCCTGAGAGGATGAAGAGGACAATCTGACTGTTCATGGTGTTGAAGGCAGCAGATAGATCTATGAGGATGAGAACAGATGAGAGAGAGTCATCTTTGACAGAGCGAAGAGCCTCCCTGACAGAGGAGAGTTGTCTCAGTTGAGTGAGCTgccttgaagcctgactggttaaggtcaagaagatcattctcagagagatagcgagagatgTGGCCATAGAcagcacgctcaagtgttttggaaggaaaagaaagaagggatactGATCTGTAGTTTTTGACATCAGAGGGGTTGAGTGTTgttttcttgaggaggggagcaacTGGCCATCTGAAGGTACGCAGCCAATGGTCAGGAATGAGTTGATGTGGGACATGAGGAATGGTAGATGGTCTCCAGATATTGtcaggagaagggaggaggagatggggtcAAGTGGACAGGTTGTCTGGTGGCCGGACATCACTAGTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45523 True 2377 lncRNA 0.42 1 37846941 37849317

Neighbor

gene id symbol gene type direction distance location
LOC118966689 NA coding downstream 153090 37688750 ~ 37693851 (-)
LOC118966688 NA coding downstream 159196 37682644 ~ 37687745 (-)
LOC118966685 NA coding downstream 165302 37676381 ~ 37681639 (-)
LOC118966683 NA coding downstream 171408 37670849 ~ 37675533 (-)
LOC110522348 LOC106573397 coding downstream 449307 37380568 ~ 37397634 (-)
LOC118964577 NA coding upstream 211772 38061089 ~ 38061663 (-)
LOC118964575 NA coding upstream 216642 38065959 ~ 38066761 (-)
LOC110520456 NA coding upstream 1165758 39015075 ~ 39019091 (-)
LOC110522389 LOC106573347 coding upstream 1231686 39081003 ~ 39084318 (-)
LOC118966691 LOC106573346 coding upstream 1251508 39100825 ~ 39115097 (-)
G40166 NA non-coding downstream 65403 37781299 ~ 37781538 (-)
G40163 NA non-coding downstream 68081 37778555 ~ 37778860 (-)
G40160 NA non-coding downstream 70171 37776556 ~ 37776770 (-)
G40151 NA non-coding downstream 75684 37770985 ~ 37771257 (-)
G40133 NA non-coding downstream 89487 37757196 ~ 37757454 (-)
G40405 NA non-coding upstream 35161 37884478 ~ 37884724 (-)
G40407 NA non-coding upstream 37679 37886996 ~ 37887284 (-)
G40410 NA non-coding upstream 41784 37891101 ~ 37891312 (-)
G40413 NA non-coding upstream 43535 37892852 ~ 37893231 (-)
G40421 NA non-coding upstream 51264 37900581 ~ 37900880 (-)
G40079 NA other downstream 129908 37716540 ~ 37717033 (-)
G38855 NA other downstream 1336112 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 1437922 36370091 ~ 36409064 (-)
G38045 LOC106573386 other downstream 2124885 35721440 ~ 35722056 (-)
G37976 NA other downstream 2263333 35583292 ~ 35583608 (-)
G40732 NA other upstream 275963 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 338171 38187488 ~ 38191736 (-)
G41868 NA other upstream 1172488 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 5189411 42852829 ~ 43129052 (-)
G49774 NA other upstream 7871488 45720805 ~ 45721124 (-)

Expression


Co-expression Network