G40768 (LOC106573348)


Basic Information

Item Value
gene id G40768
gene name LOC106573348
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 38187488 ~ 38191736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU45924
gcactttgagatatcagctgatgtacgaagggctatataaaataaatttgatttgatttgatttgatatttctcAGAAACAAAATGGACCCGAAAAAGAAAAAGCACTGTTGCATAACCTTTCTTAGATGTTTAACATTATGGAGGGAGtggagaccaaaatgaaaagcaGGGGGGGTGCTATGCTGAcaaatggaattgttttaagaccACTTTAGGTAGCaaagaaatatttttaaaaaaacgatttaataaaaTATTGATTTGGGcctatagaaacacattgaataacacattcaaaaaggacagtcaaaaaataaatcataggaaacaaggttttgaagtgtatGTCCTAAATCTCGTCGATCATTTTTTTAAACTCAGGAAATATATgtactaaatatatatatatttttacacataTTGAACCCCTTTTTTtgggtaggcacaaaactaccttaATACTTCCATTCGTTTTTTAAaccggttaccttcagatgagttccGTGACATTTGTTGGGATATCCACTTTCCATAGAGTGGTTAAATTagtcaaaccgttcggacgcttCAGACACAaaaaactgatatctctagcttaaactggtggattttgatggggattttttggTTTAGTAACTTAGATTGATGCACAATCTATAAAAATACTCCTGGGGTATGTGGCTAAGCCTTGGATGTGAAGGGTATTTGCTTGGCCTCTTTATTTATGGCACCATTTTTTCCAGGGAGCAGGTGCCTGTGAAGCACTGTCCACCCAAAGCCCTGAGGGTATGTCGATTAAAATAGAAATGGTGTCATGGTTGAGGCAGAGAGATGCAGGTGTGACCTGAACATCTGCTCGAAGCCACACACCTCATCCCtaaaccctctctctatctctctctctctgcatgaacCCTGGcactctgtcctctatccctcgTCCTGAGCTTGGCAGGGGCACGGTGTGAATCTGGGCCTGTCGTGCCTATGTGCCCAATGTTTGAACAGACAATAGATAGGCAATGTGCTAGGACAGATATGTTCGGTGTCCTTAGCCCCCGTTCCCACTCACCAGTCTGCTCCTTGCTGCCCTGGTTGAAGTCAGGGGTCATAGAGAGTTAACACAGGAGAGTCATCAGTATCCTTGGTGGTCTTCCAGGgctctttttttaaatcaagtcACACAAATCAGTATTTCTCTTAATTAAAACCTGGAAAAGTATTTGTGTCAGGAACCACACAAATATCATATAGCAATTTTCAGAGATTTGCAATGAGACTGCAGATAAGATGATCTGGAATAGCACCCATATCTGTGATGATATGGTAAACCATCATAACAGCTGGTGTGGGATGGAAAAAGGCAGTATGACATTCAGGGAGCTCTCATATGCCTGACTGTATTTGCCAATGCGATCTCCATGACTCACAAAGTTATGATGGATCAGAGCAAGTGGAATAGAGAAGGAATCACAAATGGTATGAATACACAACGTGTAAATGAGACAAACACTGTGTGAAACGTGATTTTCTGGTGTAATACACACAGTGAGATAACTATGAATCACTTGTTGCTAACAGTTGGCCATGGTATAGTTTGGATCACACTTCCCTCGTTTAACGTCCCTAATCTATTGATGGCAAAGCCAAGGGTACATCTGTATCTAATTTGAGTGGCAGATTTAATGAAATATTGTGTTATCAGATTTCATCACTGACAGTCCCAGCATTCACCCTCAGATAACGACCAAGCTTTTAATCCATCTAAATTAACTGATTGTCacaaaatatttaatcaattcaTTTGTGGCAGGAGGAAATCTCTAATGTGATCTAGAAATTATCTAAGTATGTGGGGTAAAAAGAGGTTGCCAATTTGCCATCACTTACATATTGGGGGAAACCAGAACATGGTTAGCTTGAGATTCACATAGAGTTTGTAAGCATATTAGTAAACCATCCTCCctcaaattaagaaaactaaacatcTGATGAAATAAGTTCTGAAAAAATAATTGCAGAATACAGTTTGTTCTTGATTTAGCCACAATAGATTTTTTCTTAAATAAATAACTTCTTTTTTGTAAAGACATTTTTTGAAACATTAGACATACCCTAGATCCCAATGTCATTGAATAAACATCATCAACCACTGATTCGCTGGACAAACAGTCAGTCAAGTCCTCCACTTCACATCCATAATCCTCATAACTAATATCCAATAATGTCCCTTTTGTAATTTCATCAGTTCGTCTCATTATGAAAAAATTGTTAGATCTGAGTCTCTTGTACATTGTCTTTCGAACTGGCCCGGATTAACAAAGGTTCGTGCGCCGAGCTGTGTATGGAGTTGATAGTGGAGACGTGGTTGTACGCAGACTTATAGGTGTTGTAGTGGTTCAGGTGCTCATGCTCCAGCGGGGGCAGATTCAGGTGGCCCTCCATGGTCGGCCCGCCTGTCACACAGTCCTCGTCTACATTGATGATCTCAATGGTGCGCTGTGGCGCATGGTGGTTCTGCTGGTGGTGCTGCTTCCTCATCTTGTAGAAGATGATTAGCATAACGGCGGCCATGAGGGTGATGGCCACGAAGCAGCCGATGATGATTTTGGTGGTCTTCATCACCTCATCCAGGCCGGTCATGGAGCTGTCATTCAGGTCTGTGACAGGGATGGTAAAGGTCTTCTCTGTGGCCCGGGTGGAGAGGGGCGTCCGGGccgttgtggtggtggtggaggtggacgaCACAGTCTCCCAGGATCCAGCGGAGGGGGTGGGGCCCACCTTCTGCCACACGGTGGAGCGCCCCTCGTCGTGCACTGGCTCGATGGTCTCCACTGTTACTGTGGTAAAGTAGCTGAGGACGTTCTCTGTGGAAGACACGTTGAGAGTGGCAGATGCTGTGGTATTGCCTGCTGAGTTGCTTACCATGCAGGTGTAGGTTCCCGTGTCTTGCATGGTGACATTGGTGAAGTTGAGCGTGCCGTCGTTGAGCACAGAAATGCGGATCTTGTATGCACCGTGGGTCATGATGGAGCCATTGGGTGTAATCCAACTGACTGAGGTCAGAGAGCTGGCCCTGCACTTCAGCTCTGCAGCCATACCCTCTGTCACGTTCAGGTCCGCTGGTGGCTCCACAATAACAGGTGCGTAACAGTGGAAATAGTTTTGGTCCAGCTCACCTATGTAGCGTCCCTTGTGGCTAGCTGGGGAACTGCAGCGGGCACAGCAGCTGGTGTTGGCCGGCACCATCTCTTTGAGCCACCAGCTGAGCCACAGGATGTCACAGTTGCAGTTCCAGGGGTTGTGATGGAGGTGGACTCTCTCCAGGTGGTGCAGGGGGGTGAAGAGATCATGGGGCAGCAGGGTGAGGTTGTTGTGGGCCAGGTTAAGCTCCACCAGCGACTGCAGGTCGTCAAAGGAGTTCCTTTCAATGGTTTTGATCTGGGCATGCATCATCCACAGCTTCTGCAGATGGATCAACCCTTTGAAGGAGCCAGGTCTGATGACCGTCAGCTGGTTCCCTGACATCTCTAGCTCGTCCAGCTTGACCAGTGGGATGAGGTTGGGGATCTCCTTCAGATTGCACATGCCCAGGTTCAGGTAGCGCAGGTTGCCGAGGCCCTCGAAAGCCCCCTCTGAGATATACGAGAGGCGTTTGAGTTCCCCTAAATCCAGCCGCCGTAGCGAGGGCACCCTGTTGAACGCATACGAGGGAATGCTCTCGATGGGGTTGTTCCTCAGCCACAACTCCTTGAGCTTGGAGAGGTACTCAAAGGCCCCATTGGGGATTGTGGTGAGGCGGTTGTCAAACAGCTCCAGAGTGTTGAGACTAGCCAGGCCGTTGAAGGCCCCAATCTCAATGTTTCGGATGTGGTTCTTGCTCAGCTGCAGGATCTCCAGGTGCCGCAGGTGCTTGAAGCTGTCCACCTTGATCACCTGGATGAGGTTCTCCTGCAGGTTCAGGTAGCGTGTGTTGGTGGATATGCCGTCGGGGACCTCACGGAGCCCACGCCGTGTGCAGATCACCTTGCTGAACTGGTTGCTGCAGGAGCAGACAGAGGGGCAGGTCTGAGCGCGCACCAGGCCTGCCACCGCCAGGAGCTGGAGGGCTAGAAGCAGCACAAACAAATGGTCGGACAGGGCCCGGTTCCACCTAGGACCTCTCATCGTCTGCTGCTGCCGAGAAGAGGTCATCTTGTTCAACATTCATAATTCATTG

Function

NR:

description
leucine-rich repeat-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45924 True 4224 TUCP 0.57 2 38187488 38191736

Neighbor

gene id symbol gene type direction distance location
LOC118964575 NA coding downstream 120883 38065959 ~ 38066761 (-)
LOC118964577 NA coding downstream 125825 38061089 ~ 38061663 (-)
LOC118966689 NA coding downstream 493637 37688750 ~ 37693851 (-)
LOC118966688 NA coding downstream 499743 37682644 ~ 37687745 (-)
LOC118966685 NA coding downstream 505849 37676381 ~ 37681639 (-)
LOC110520456 NA coding upstream 823339 39015075 ~ 39019091 (-)
LOC110522389 LOC106573347 coding upstream 889267 39081003 ~ 39084318 (-)
LOC118966691 LOC106573346 coding upstream 909089 39100825 ~ 39115097 (-)
man2a2 man2a2 coding upstream 1123316 39315052 ~ 39336325 (-)
kip1 kip1 coding upstream 1165397 39357133 ~ 39359660 (-)
G40683 NA non-coding downstream 121189 38061165 ~ 38066299 (-)
G40680 NA non-coding downstream 129134 38058130 ~ 38058354 (-)
G40679 NA non-coding downstream 129704 38057553 ~ 38057784 (-)
G40531 NA non-coding downstream 162488 38024756 ~ 38025000 (-)
G40769 NA non-coding upstream 364 38192100 ~ 38192367 (-)
G40770 NA non-coding upstream 926 38192662 ~ 38193071 (-)
G40767 NA non-coding upstream 2469 38194205 ~ 38195330 (-)
G40771 NA non-coding upstream 4704 38196440 ~ 38196678 (-)
G40776 NA non-coding upstream 11077 38202813 ~ 38203070 (-)
G40732 NA other downstream 61763 38125280 ~ 38125725 (-)
G40079 NA other downstream 470455 37716540 ~ 37717033 (-)
G38855 NA other downstream 1676659 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 1778469 36370091 ~ 36409064 (-)
G38045 LOC106573386 other downstream 2465432 35721440 ~ 35722056 (-)
G41868 NA other upstream 830069 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 4846992 42852829 ~ 43129052 (-)
G49774 NA other upstream 7529069 45720805 ~ 45721124 (-)
G49962 NA other upstream 7757222 45948958 ~ 45949951 (-)
G51214 NA other upstream 8873038 47064774 ~ 47236625 (-)

Expression


Co-expression Network