G41861



Basic Information


Item Value
gene id G41861
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39016782 ~ 39017550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU47060
taggaaaacaatcatttgtgtaacagtagctagctagcgtagcatttagcgttagcattagcattagcattcagcaggcaacattttcacaaaaaacagaaaagcattcaaataaaatcatttacctttgaagaacttcagatgttttcaatgaggagactctgttagatagcaaatgttcagtttttcctgaaagattatttgtttaggagaaatcgctccgtttggtgcgtcacgtttggctaccaaaaaaaccctgaaaatccagtcatcaaaacgccaaacttttttccaaattaactccataatatcgactgaaacatggcaaacgttgtttagaaccaatcctcaaggtgtttttcacatatctcttcgatgatatatcgttagtggaagtgtgctttctgtcctgaatcccaggagaaaatgcccgcaactgaagattacgcaccaatttagacaaaggacaccgggcggacccctggaaaatgtagtctcttatggccaatcttccaatgatatgcctacaaatacgtcacaatgctgcagacatcttgaagaaacgacagaaagcgcaggctagttctggtgcattcacagccatataaagagacattggaaaacagagcttcagaaattctgctcatttcctgtttgaagtttcatcttggtttcgcctgtagtatgagttctgtggcactcacagataatatctttgcagttttggaaacgttagactgttttctttccaaaactgtcaattatatgc

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU47060 True 769 lncRNA 0.39 1 39016782 39017550

Neighbor


gene id symbol gene type direction distance location
LOC118964575 NA coding downstream 950177 38065959 ~ 38066761 (-)
LOC118964577 NA coding downstream 955119 38061089 ~ 38061663 (-)
LOC118966689 NA coding downstream 1322931 37688750 ~ 37693851 (-)
LOC118966688 NA coding downstream 1329037 37682644 ~ 37687745 (-)
LOC118966685 NA coding downstream 1335143 37676381 ~ 37681639 (-)
LOC110522389 LOC106573347 coding upstream 63453 39081003 ~ 39084318 (-)
LOC118966691 LOC106573346 coding upstream 83275 39100825 ~ 39115097 (-)
man2a2 man2a2 coding upstream 297502 39315052 ~ 39336325 (-)
kip1 kip1 coding upstream 339583 39357133 ~ 39359660 (-)
c1h15orf40 cssa16h15orf40 coding upstream 464051 39481601 ~ 39486010 (-)
G41819 NA non-coding downstream 34547 38982006 ~ 38982235 (-)
G41813 NA non-coding downstream 38907 38977652 ~ 38977875 (-)
G41798 NA non-coding downstream 46692 38969768 ~ 38970090 (-)
G41557 NA non-coding downstream 223049 38793520 ~ 38793733 (-)
G41551 NA non-coding downstream 227461 38789113 ~ 38789321 (-)
G41876 NA non-coding upstream 10653 39028203 ~ 39028428 (-)
G41963 NA non-coding upstream 67392 39084942 ~ 39085154 (-)
G42408 NA non-coding upstream 74687 39092237 ~ 39092455 (-)
G42409 NA non-coding upstream 74982 39092532 ~ 39092743 (-)
G42416 NA non-coding upstream 79588 39097138 ~ 39097342 (-)
G40768 LOC106573348 other downstream 825046 38187488 ~ 38191736 (-)
G40732 NA other downstream 891057 38125280 ~ 38125725 (-)
G40079 NA other downstream 1299749 37716540 ~ 37717033 (-)
G38855 NA other downstream 2505953 36508538 ~ 36510829 (-)
LOC110522187 LOC106573361 other downstream 2607763 36370091 ~ 36409064 (-)
G41868 NA other upstream 4255 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 4021178 42852829 ~ 43129052 (-)
G49774 NA other upstream 6703255 45720805 ~ 45721124 (-)
G49962 NA other upstream 6931408 45948958 ~ 45949951 (-)
G51214 NA other upstream 8047224 47064774 ~ 47236625 (-)

Expression



Co-expression Network