G42605


Basic Information

Item Value
gene id G42605
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39389371 ~ 39390941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU47864
ctgatatgtgacacatattaatgccaaaataacatgcaaaacaggcaagccaaaaaaattaaaatatttatatattttttttttgttgctaaaaaTCTGGGGCTAATTGTCAAACTAATATTAATGTACAACAATATAGAAGATACATAACTAAAAGTTATGCAATATGGGTATATGTCCACTGCACACTTCTTAGGTGTGTAATTGACATGAGATTGCAGTACACAAACAAGAGTGTGCAATATATAAGGCTAGTCCGTGAACCTTCTGAAGTCTGTTTGAGGTCATTAGGTCACAtaaccaaggagctattgaaattctaaagtttgaaaaatgtatgtaaaaacgtgtgagatgaaaatggacaaactaaagggtgtgcaatgtgtaggcccactgagtaGACATTATGAACCTAATTTGAGGTTTGTGACATGACCAAGGCGCTATTGAATTACAAGATGttttataaataatttaaaatagtgCGAGATGTAAATTGACAAAAGAATAGTGTGTGCAATGTGTGTCTCTGCCATCAGGTTAGCTAGAATCCGTTTTGAACGTTTTTAGGAGTAATGgttaaagagctattgaaataaaaaaaatgtgatttgtcaatacgttgacggtccctaactgctgttggtggacGTTAGGAAAACTACAATATCCGTCGAATATCCAACCTGAATAAAGTCTTTACCTCGGTCGCAGATTTTCCAATTTCAAAACGATTTGGAGCACAACACGAATTAGAAAAATAAATGCAGTACTTTTCAATGTGTGAGATGTAAGAGGTGTGCCGTGGGAGCGTGAGATGAGGGTCAAATCCATGTCTCACAGTCAATGCGTGAGAGTTGGCAGCTCCGGTTTGATGGGATTCAGGAGCTGAGGGCCGCCTGACTGCTCAGCTGAGCggacacacagaaacagagatgAACACTGGGAAACACAGGAAAGAGAGTCGTGTATACTGTATCTCCTACTAATGTTGATTATGATTAAGGAGAAACTTACATGCATCTCAAGTTAGGGTTTTGTTATCAGTGGAACATGTTCAGCAATTTACAGATGTATTTTTATACCATGTGTaccttcagtgattttttttgtacagatgtgaaaagattaaatgtttGTCTTTTTAgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47864 True 1152 lncRNA 0.37 2 39389371 39390941

Neighbor

gene id symbol gene type direction distance location
kip1 kip1 coding downstream 29711 39357133 ~ 39359660 (-)
man2a2 man2a2 coding downstream 53046 39315052 ~ 39336325 (-)
LOC118966691 LOC106573346 coding downstream 274274 39100825 ~ 39115097 (-)
LOC110522389 LOC106573347 coding downstream 305053 39081003 ~ 39084318 (-)
LOC110520456 NA coding downstream 370280 39015075 ~ 39019091 (-)
c1h15orf40 cssa16h15orf40 coding upstream 90660 39481601 ~ 39486010 (-)
si:ch211-59o9.10 LOC106573327 coding upstream 139227 39530168 ~ 39543311 (-)
LOC110522511 LOC106573329 coding upstream 152553 39543494 ~ 39547739 (-)
LOC110522519 LOC106573326 coding upstream 162490 39553431 ~ 39563229 (-)
LOC110522541 LOC106573325 coding upstream 189896 39580837 ~ 39583183 (-)
G42429 NA non-coding downstream 275739 39113322 ~ 39113632 (-)
G42420 NA non-coding downstream 285826 39103062 ~ 39103545 (-)
G42418 NA non-coding downstream 288998 39100132 ~ 39100373 (-)
G42416 NA non-coding downstream 292029 39097138 ~ 39097342 (-)
G42409 NA non-coding downstream 296628 39092532 ~ 39092743 (-)
G42661 NA non-coding upstream 83845 39474786 ~ 39475050 (-)
G42663 NA non-coding upstream 88069 39479010 ~ 39479259 (-)
G42668 NA non-coding upstream 97091 39488032 ~ 39488448 (-)
G42670 NA non-coding upstream 98125 39489066 ~ 39489405 (-)
G41868 NA other downstream 367346 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1197635 38187488 ~ 38191736 (-)
G40732 NA other downstream 1263646 38125280 ~ 38125725 (-)
G40079 NA other downstream 1672338 37716540 ~ 37717033 (-)
G38855 NA other downstream 2878542 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3647787 42852829 ~ 43129052 (-)
G49774 NA other upstream 6329864 45720805 ~ 45721124 (-)
G49962 NA other upstream 6558017 45948958 ~ 45949951 (-)
G51214 NA other upstream 7673833 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7897998 47288939 ~ 47289681 (-)

Expression


Co-expression Network