G42287


Basic Information

Item Value
gene id G42287
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39700148 ~ 39731442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU47520
cacacacacacacacacacacacacacacacacacacacacatacagcagagtttGAATGTCACTTGTGACTTGAGAACATAAGTGTGTTTAtgtttttcattattattattacattgaaTCAGTGAAAGAACAACAAATTCAAGGAAGAGTGAATGTGTGAATGTATTCCATGAAAAAATTTCAGATTTCTCCAGTATTTTCTAGTCTCTTGTGATTTTTGCCAAAGTATATTTTAAGCATCCTCTTGCATAATCTTCCATCGTCTTCCCTCTAGCTTGTTGTGGTCCTCTGGTTCTGTGAACagtgtaggctactgtagctcCTCATGCCAGATGTAtaaactgactatgacagtgacaGAGATGGTTTTAACTGTCTAATGGTTGTTTGGTCCATACCAGGATCCCCAATAGGGTATGCAGAATCCTGACGACTCCATATCCAGACCTGAGAATATGACAGAAATAATTATTAAGAACACGCACATACACTATACAGTaaaagtcaaaagtttgaacaaa
>TU47519
TCCCAACACATGGTGCTGTCCAAGGTACTGATACAAGAGGACTAAATGATAAGTTGTTTGCTTTGCACGATGGCCAGCTCCAAAGAGGTGGGTTTCTCTCAGCATGGTAGCCTATATTACAATTGTTTTAATCACCCATACCCCTGTGCTACATTTCTCATTCTAGTTTGAGGCAGGTGTCCTTCGGCCCACTCCCCACCCAAAGTGTTCTTTTGGTTCTCCACATTTACTATCCCTTAAAAAATTGATGAACATGAAGCAAGACACAAATGATCATTGTACATCATTTAATTGACAACAATGTGGAATCACTTTCTTTAGGGTTTATAAAGAGCAAtgccacgcacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacagcagagtttGAATGTCACTTGTGACTTGAGAACATAAGTGTGTTTAtgtttttcattattattattacattgaaTCAGTGAAAGAACAACAAATTCAAGGAAGAGTGAATGTGTGAATGTATTCCATGAAAAAATTTCAGATTTCTCCAGTATTTTCTAGTCTCTTGTGATTTTTGCCAAAGTATATTTTAAGCATCCTCTTGCATAATCTTCCATCGTCTTCCCTCTAGCTTGTTGTGGTCCTCTGGTTCTGTGAACagtgtaggctactgtagctcCTCATGCCAGATGTAtaaactgactatgacagtgacaGAGATGGTTTTAACTGTCTAATGGTTGTTTGGTCCATACCAGGATCCCCAATAGGGTATGCAGAATCCTGACGACTCCATATCCAGACCTCGTGTGCCAGCCCAGCCATTTTAGGTACCGCGGCAACATCTCCCAAGATggctcctttctctcctctttcagcACCCATCCGGTGGGGATCAGGCACAGTCTTTGTCCCCTCTCTTGTCTCCCTGTTGGCAGTACAGATGACATTAGAGGCTGGTGGGTAAAGGGGGTGGGGTGTTGGGATAGGGGTTGGCAATTTCCAGATAGTTTCATCCTCTTATTTCTCTTTTTGCGGTGATTCTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47520 False 523 lncRNA 0.37 2 39700148 39719630
TU47519 True 1085 lncRNA 0.39 3 39718598 39731442

Neighbor

gene id symbol gene type direction distance location
LOC110522559 LOC106573321 coding upstream 5573 39680618 ~ 39694575 (+)
LOC110520525 LOC106573323 coding upstream 54928 39636888 ~ 39645220 (+)
LOC110522487 LOC106573330 coding upstream 181789 39501905 ~ 39518359 (+)
LOC110522473 rs17 coding upstream 227322 39466156 ~ 39472826 (+)
polg polg coding downstream 10429 39741871 ~ 39754195 (+)
trnar-acg NA coding downstream 24938 39756380 ~ 39756452 (+)
fbxo31 LOC106573317 coding downstream 34746 39766188 ~ 39790046 (+)
LOC110522607 LOC106573315 coding downstream 77421 39808863 ~ 39882239 (+)
LOC110522618 LOC106573312 coding downstream 572391 40303833 ~ 40463282 (+)
G42261 NA non-coding upstream 37355 39662468 ~ 39662793 (+)
G42208 NA non-coding upstream 51516 39647538 ~ 39648632 (+)
G42183 NA non-coding upstream 155365 39543510 ~ 39544783 (+)
G42172 NA non-coding upstream 212247 39487557 ~ 39487901 (+)
G42171 NA non-coding upstream 212853 39487022 ~ 39487295 (+)
G42319 NA non-coding downstream 56793 39788235 ~ 39825280 (+)
G42370 NA non-coding downstream 106690 39838132 ~ 39838564 (+)
G42378 NA non-coding downstream 117619 39849061 ~ 39849383 (+)
G42395 NA non-coding downstream 140433 39871875 ~ 39872259 (+)
G42397 NA non-coding downstream 142427 39873869 ~ 39874072 (+)
LOC110522455 LOC106573334 other upstream 296818 39401145 ~ 39403331 (+)
G40150 NA other upstream 1928003 37771654 ~ 37772145 (+)
G40149 LOC100136012 other upstream 1928680 37770945 ~ 37771468 (+)
G43208 NA other downstream 369011 40100453 ~ 40101172 (+)
G43352 NA other downstream 473844 40205286 ~ 40205705 (+)
LOC110522691 NA other downstream 1014298 40745740 ~ 40754201 (+)
G43922 LOC106600457 other downstream 1194050 40925492 ~ 40929476 (+)

Expression


Co-expression Network