G43089


Basic Information

Item Value
gene id G43089
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39982451 ~ 39983876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU48398
actttttcaaagtcactgtccatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttacccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtttttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcttgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctataaaaatcctgcaggaatgtgaaattgactggcccgatgaactcgggatggctttgcagtgattctgggtcatctcaatcgctcgtttgggttgatttcagaatgtcgcttttggtgatgttttttcactatagaatcatattgcaaatgtacaagagtcaagtggacaagagtccatcagtcaattagatatcattctgaccaccaaactgatacaaactgacaccaaacccactttttccaactcgtttagtagccaactattacatacttcagagctggcccaaaattcacaacgccttcggtacaaaccataaaaaaaccataaaacacgtagttacgttc
>TU48400
actttttcaaagtcactgtccatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttacccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtttttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctataaaaatcctgcaggaatgtgaaattgactggcccgatgaactcgggatggctttgcagtgattctgggtcatctcaatcgctcgtttgggttgatttcagaatgtcgcttttggtgatgttttttcactatagaatcatattgcaaatgtacaagagtcaagtggacaagagtccatcagtcaattagatatcattctgaccaccaaactgatacaaactgacaccaaacccactttttccaactcgtttagtagccaactattacatacttcagagctggcccaaaattcacaacgccttcggtacaaaccataaaaaaaccataaaacacgtagttacgttc

Function

NR:

description
PREDICTED: bladder cancer-associated protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48398 False 1040 lncRNA 0.35 3 39982451 39983876
TU48400 True 1129 lncRNA 0.35 3 39982451 39983876
Loading

Neighbor

gene id symbol gene type direction distance location
trnar-ucg NA coding downstream 240966 39741413 ~ 39741485 (-)
LOC110522570 NA coding downstream 246511 39718042 ~ 39735940 (-)
LOC110522551 LOC106573324 coding downstream 363783 39596545 ~ 39618668 (-)
LOC110522541 LOC106573325 coding downstream 399268 39580837 ~ 39583183 (-)
LOC110522519 LOC106573326 coding downstream 419222 39553431 ~ 39563229 (-)
kras rask coding upstream 513505 40497381 ~ 40513885 (-)
bhlhe41 LOC106573310 coding upstream 581443 40565319 ~ 40568730 (-)
LOC110522681 LOC106573309 coding upstream 606216 40590092 ~ 40750790 (-)
eea1 LOC106573307 coding upstream 806194 40790070 ~ 40833456 (-)
nudt4a LOC106573306 coding upstream 865640 40849516 ~ 40879189 (-)
G42887 NA non-coding downstream 111628 39870586 ~ 39870823 (-)
G42883 NA non-coding downstream 114640 39867584 ~ 39867811 (-)
G42876 NA non-coding downstream 123839 39853154 ~ 39858612 (-)
G42866 NA non-coding downstream 146493 39835729 ~ 39835958 (-)
G42863 LOC106573315 non-coding downstream 150206 39832017 ~ 39832245 (-)
G43132 NA non-coding upstream 61116 40044992 ~ 40045244 (-)
G43165 NA non-coding upstream 78354 40062230 ~ 40062442 (-)
G43209 NA non-coding upstream 116984 40100860 ~ 40101124 (-)
G43214 NA non-coding upstream 126034 40109910 ~ 40110244 (-)
G43247 NA non-coding upstream 148158 40132034 ~ 40132247 (-)
G41868 NA other downstream 960426 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1790715 38187488 ~ 38191736 (-)
G40732 NA other downstream 1856726 38125280 ~ 38125725 (-)
G40079 NA other downstream 2265418 37716540 ~ 37717033 (-)
G38855 NA other downstream 3471622 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3054852 42852829 ~ 43129052 (-)
G49774 NA other upstream 5736929 45720805 ~ 45721124 (-)
G49962 NA other upstream 5965082 45948958 ~ 45949951 (-)
G51214 NA other upstream 7080898 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7305063 47288939 ~ 47289681 (-)

Expression

G43089 Expression in all Baseline Samples

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G43089 Expression in each Bioproject

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G43089 Expression in each Sample
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Co-expression Network