G47595


Basic Information

Item Value
gene id G47595
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44044670 ~ 44048011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53233
TCTTCTGTACATGACACAATTCCTTTGAGAAGGgcttcctcacctctttcctgTGTTTTTCGTTGCCCAGGCCTCGCTCTTTCTGCAGGCGCTCAAACTCCCGCGTTACATTGATCTCTGACACCAGCGTCAGTAGGCGTCTCGTCAGGCCCTGGCTCATCAGCTCATCTGTGAAGCGTGTGGTGAGGGCCACCAGCTCCCCACTTAATTCCAAGGTGAAGGTCTTGCCATGGCGGGACTGGATGAGCGAGCGCAAGGAGTTGGCCACGCAGAGCTTTCCATCCCAGTACAGCAGCACTGCAACCAGCCCCCGACTCAGACCTGGAAAGTGGGGCTGCTGGTTCTCACCTGCCAACAGCAGCTCCAGGGCTGCCAGCTCTCCAATGTCAAAGAGGTCACTCAAGATGAAGGCCTCTGTAAGCAGCTGCTCGGGGAGGAGACGTGACCCCTGCTGGCCCTGGATGGCAATGCCCTCTGTGCTGGCTTTCCGCAccttctccctctgctctgcACTCTTTGGCGGGTTCTTGTAGAGTGAGAGGAAATTGGGCTTGTGTTTCTTGAGTTGAAGGTCTAGGAGGTGGACGCTCTCTGGTTGCCTCCTCCACACTGCACCCTCCACTGTGTCCCATAGCTCCTTCAGCGGCCCCCACAGACTGGCTCCTGAATTTACCGCCATCTGCG
>TU53235
CtctttttatgcagatttttgaaTATTTGCATAAAAATCTTGCCAATTGGTTGGAAACCTAGCTTCTGACAGCATCTCACCGGGTTCTTGTAGAGTGAGAGGAAATTGGGCTTGTGTTTCTTGAGTTGAAGGTCTAGGAGGTGGACGCTCTCTGGTTGCCTCCTCCACACTGCACCCTCCACTGTGTCCCATAGCTCCTTCAGCGGCCCCCACAGACTGGCTCCTGAATTTACCGCCATCTGCG

Function

NR:

description
nuclear pore complex protein Nup205

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU53233 False 684 TUCP 0.35 5 44044670 44048011
TU53235 True 244 lncRNA 0.49 2 44046550 44048011

Neighbor

gene id symbol gene type direction distance location
fgd4a NA coding upstream 17973 43922324 ~ 44028577 (+)
bicd1a LOC106573182 coding upstream 127708 43822071 ~ 43918842 (+)
LOC110520672 LOC106573273 coding upstream 236789 43807046 ~ 43809761 (+)
tmtc2b LOC106573180 coding upstream 413969 43455055 ~ 43634193 (+)
LOC110523264 LOC106573178 coding upstream 768264 43236492 ~ 43278286 (+)
LOC110523376 LOC106573186 coding downstream 877 44048888 ~ 44052979 (+)
LOC118964631 NA coding downstream 77882 44125893 ~ 44134097 (+)
LOC110523417 LOC106573190 coding downstream 107895 44155906 ~ 44215887 (+)
LOC110523466 LOC106573194 coding downstream 240069 44288080 ~ 44306290 (+)
LOC110523455 LOC106573195 coding downstream 258496 44306507 ~ 44347937 (+)
G47481 nup205 non-coding upstream 14476 44028758 ~ 44032074 (+)
G47500 NA non-coding upstream 205076 43836325 ~ 43841474 (+)
G47470 NA non-coding upstream 239736 43806589 ~ 43806814 (+)
G47466 NA non-coding upstream 244652 43801565 ~ 43801898 (+)
G47463 NA non-coding upstream 253110 43792958 ~ 43793440 (+)
G47597 NA non-coding downstream 71 44048082 ~ 44048347 (+)
G47607 NA non-coding downstream 17322 44065333 ~ 44065659 (+)
G47666 NA non-coding downstream 97741 44145752 ~ 44147231 (+)
LOC110523475 LOC106573196 non-coding downstream 228321 44276332 ~ 44360258 (+)
G47777 NA non-coding downstream 249418 44297429 ~ 44297863 (+)
G47467 NA other upstream 243587 43802513 ~ 43802963 (+)
G47212 NA other upstream 433496 43612430 ~ 43613054 (+)
G45870 NA other upstream 1154957 42891218 ~ 42891593 (+)
LOC110522826 LOC106573295 other upstream 2753646 41282901 ~ 41292913 (+)
G43922 LOC106600457 other upstream 3117074 40925492 ~ 40929476 (+)
G47667 LOC106573189 other downstream 91080 44139091 ~ 44143716 (+)
e2f4 LOC106573204 other downstream 672694 44720664 ~ 44748569 (+)
G47910 LOC106573211 other downstream 741619 44789630 ~ 44791090 (+)
LOC110523657 NA other downstream 1023343 45071354 ~ 45072433 (+)
G48976 NA other downstream 1097267 45145278 ~ 45146640 (+)

Expression


Co-expression Network