G47667 (LOC106573189)


Basic Information

Item Value
gene id G47667
gene name LOC106573189
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44139091 ~ 44143716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53309
ataaGGATTAGATGGTCTTATTGTGTGCATTACAGTGTAGGACTGAACAACATGTACTGCGACTGAATAACGTGTACGTTACTGAATGACACTGAGAATACAGAGGTTTATCTCTGCTTTATGGGGCTCCCCCAGCCtttccctgcctctgtctctctcaccgtcCAGTGGTGTGACAGCTACAGCTGCCACTGATCCGGCTGTGCAGCCTGCCGTGAAGGACTGCAGGAAGGGGGCCCGCTCCTGCAGGTCTCCATGGCTACTCGGCCCTCCTCGGCCCAGCGCGTTCAGGTTGGCGAACATCGGGAAGTAGATCATAGAGAAAGGGACGTCCCTCATCAATGTGGCTCCTGCTCCCCGGTAGAGGCCAGGCAGGCCGCGTGTTTTCAGTAGCTCCAGGGTGATACGGATGGCAGTGGTCCGTGGTGGTGGGACTGGCTGGGCTGCAGGGGGGGCCACCAATGACGGCGCTGGACCAGGAGCTGCAGTGGGTGCTTGGACCACTCTGGTTATGgcagCCAACCTTCCTGCATCTTGCAACTGGATCTTGAGCATCTCCATGGGTGTGGTCACTATCACCTGACACGTCCCCGCCCCACATCCTGCCAGTATCTCCCCCCATAGGGGCAACTTCCTGTGGGACAAAATGAGAGGGTTAGCAGGGTAATAAATAACACAAAGCAATGGCACCACCATTCTGATAAATAGACACAGTGCACTGCAGGAATAGCACCTTCGATCGTCTGACTTTATTACATTAATGTTATGTTAACTAAGGATTATCCACCTGATGAACTTTTTGCatgaatacagttgaagttggaagtttacatacacttaggttggagtcattaaaaatagatttttcaaccactcttggaagttggttaggatctaatttttccaacaattgtttacagacagattatttaacttctaattcactgtatcacaattccagtgggtcaaaagtttacatacgctaaattgactgtgcctttaaaaagctgggaaaattccagaaaattatatcatggctttagatgccATGATagattttagtcaattggaggtgtacctgtggatgtatttcaaggcctatcttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagtcaatacATCAGAataaatattgtagacctccacaagtttggttcatccttgggagcaatttccaaatgcctgaaggtaccacgtgcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacacattctgtctcctagagatgaacatactttggagcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatggacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactatagtttgcaactgcacgtgggaacaaagattatactttttggaaaaatgtcctctggtctgatgaaacaaaaatcgcCATAATGGCCATAaagaccatcgttgtgtttgtaggaaaaagggggatgcttgcaagccaaagaacaccatcccaaccatgaagcacaggggtggcagcaacatgttatgggggtgcttttctgcaggagggactggtgcacttcacaaaatagatggcatcatgagggaggaaaattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaagaacaacaaagtcaaggtattggagtggctaacacaaagccctgacctcaatcctatagaaattgtgggcagaactgaaaaagagtgtgcgagcaaggaggcctaaacctgactcagttacaccagatctgtcaggaggaatgggccaaaattcacccaacttactgtgggaagcatgtggaaggaAGGCTACcctgtttgacccaagttaagcaacttgaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgccccactgggaaagtgatgaaagaaataaaagctgaaataaatcattctctctactattattctgacatatcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatttttactagtattaaatgtcacgaattgtgaaaaactgagtttaaatgtggtgtaaggtgtatgtaaacttccgacttcaactgtaagtacttTAAGGCAGAGGTTCTCAAGGTggggtccaatgcagctgtttttatctcaatataaaattgtttctgggtaacaattaagtaccttact

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53309 True 2473 TUCP 0.39 3 44139091 44143716

Neighbor

gene id symbol gene type direction distance location
LOC118964631 NA coding upstream 4994 44125893 ~ 44134097 (+)
LOC110523376 LOC106573186 coding upstream 86112 44048888 ~ 44052979 (+)
fgd4a NA coding upstream 110514 43922324 ~ 44028577 (+)
bicd1a LOC106573182 coding upstream 220249 43822071 ~ 43918842 (+)
LOC110520672 LOC106573273 coding upstream 329330 43807046 ~ 43809761 (+)
LOC110523417 LOC106573190 coding downstream 12190 44155906 ~ 44215887 (+)
LOC110523466 LOC106573194 coding downstream 144364 44288080 ~ 44306290 (+)
LOC110523455 LOC106573195 coding downstream 162791 44306507 ~ 44347937 (+)
LOC110523475 LOC106573196 coding downstream 210035 44276332 ~ 44360258 (+)
LOC110523481 LOC106573277 coding downstream 217219 44360935 ~ 44368030 (+)
G47607 NA non-coding upstream 73432 44065333 ~ 44065659 (+)
G47597 NA non-coding upstream 90744 44048082 ~ 44048347 (+)
G47595 NA non-coding upstream 91080 44044670 ~ 44048011 (+)
G47481 nup205 non-coding upstream 107017 44028758 ~ 44032074 (+)
G47500 NA non-coding upstream 297617 43836325 ~ 43841474 (+)
G47666 NA non-coding downstream 2036 44145752 ~ 44147231 (+)
G47777 NA non-coding downstream 153713 44297429 ~ 44297863 (+)
G47764 NA non-coding downstream 243813 44387529 ~ 44389867 (+)
G47821 NA non-coding downstream 256888 44400604 ~ 44460496 (+)
G47467 NA other upstream 336128 43802513 ~ 43802963 (+)
G47212 NA other upstream 526037 43612430 ~ 43613054 (+)
G45870 NA other upstream 1247498 42891218 ~ 42891593 (+)
LOC110522826 LOC106573295 other upstream 2846187 41282901 ~ 41292913 (+)
e2f4 LOC106573204 other downstream 576989 44720664 ~ 44748569 (+)
G47910 LOC106573211 other downstream 645914 44789630 ~ 44791090 (+)
LOC110523657 NA other downstream 927638 45071354 ~ 45072433 (+)
G48976 NA other downstream 1001562 45145278 ~ 45146640 (+)
G49142 NA other downstream 1270990 45414706 ~ 45418180 (+)

Expression


Co-expression Network