G47915


Basic Information

Item Value
gene id G47915
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44659152 ~ 44659356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53581
gctgtacatagtccatcggtaaatagcccacccaatttacctacctcatccccatactgtttatatttatttacttttctgctcttttgcacaccagtatctctacctgcacatgaccatctgatcatttatcactccagtgttaatctgctaaattgtaattattcgcctacctcctcatgccttttgcacacaatgtatatag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53581 True 205 lncRNA 0.43 1 44659152 44659356

Neighbor

gene id symbol gene type direction distance location
kdm7ab LOC106573199 coding upstream 11731 44598632 ~ 44647421 (+)
LOC118964638 NA coding upstream 190693 44456457 ~ 44468459 (+)
LOC110523481 LOC106573277 coding upstream 291122 44360935 ~ 44368030 (+)
LOC110523475 LOC106573196 coding upstream 298894 44276332 ~ 44360258 (+)
LOC110523455 LOC106573195 coding upstream 311215 44306507 ~ 44347937 (+)
cnot1 LOC106573200 coding downstream 4571 44663927 ~ 44681956 (+)
e2f4 LOC106573204 coding downstream 61308 44720664 ~ 44748569 (+)
LOC110523610 LOC106573209 coding downstream 90402 44749758 ~ 44787067 (+)
vac14 vac14 coding downstream 197552 44856908 ~ 44886958 (+)
trnag-gcc NA coding downstream 209714 44869070 ~ 44869140 (+)
G47905 NA non-coding upstream 6436 44652433 ~ 44652716 (+)
G47903 NA non-coding upstream 8140 44650581 ~ 44651012 (+)
G47870 NA non-coding upstream 38095 44561721 ~ 44621057 (+)
G47866 NA non-coding upstream 106275 44552503 ~ 44552877 (+)
G47771 NA non-coding upstream 107938 44549743 ~ 44551214 (+)
G47922 NA non-coding downstream 23971 44683327 ~ 44683688 (+)
G47925 NA non-coding downstream 28460 44687816 ~ 44688015 (+)
G47926 NA non-coding downstream 29088 44688444 ~ 44688798 (+)
G47906 NA non-coding downstream 52864 44712220 ~ 44713834 (+)
G47980 NA non-coding downstream 115480 44774836 ~ 44776546 (+)
G47667 LOC106573189 other upstream 515436 44139091 ~ 44143716 (+)
G47595 NA other upstream 611141 44044670 ~ 44048011 (+)
G47467 NA other upstream 856189 43802513 ~ 43802963 (+)
G47212 NA other upstream 1046098 43612430 ~ 43613054 (+)
G45870 NA other upstream 1767559 42891218 ~ 42891593 (+)
G47910 LOC106573211 other downstream 130274 44789630 ~ 44791090 (+)
LOC110523657 NA other downstream 411998 45071354 ~ 45072433 (+)
G48976 NA other downstream 485922 45145278 ~ 45146640 (+)
G49142 NA other downstream 755350 45414706 ~ 45418180 (+)

Expression


Co-expression Network