G47926


Basic Information

Item Value
gene id G47926
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44688444 ~ 44688798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53595
caggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcgtttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatgtctttcttcttaccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU53595 True 355 lncRNA 0.34 1 44688444 44688798

Neighbor

gene id symbol gene type direction distance location
cnot1 LOC106573200 coding upstream 6488 44663927 ~ 44681956 (+)
kdm7ab LOC106573199 coding upstream 41023 44598632 ~ 44647421 (+)
LOC118964638 NA coding upstream 219985 44456457 ~ 44468459 (+)
LOC110523481 LOC106573277 coding upstream 320414 44360935 ~ 44368030 (+)
LOC110523475 LOC106573196 coding upstream 328186 44276332 ~ 44360258 (+)
e2f4 LOC106573204 coding downstream 31866 44720664 ~ 44748569 (+)
LOC110523610 LOC106573209 coding downstream 60960 44749758 ~ 44787067 (+)
vac14 vac14 coding downstream 168110 44856908 ~ 44886958 (+)
trnag-gcc NA coding downstream 180272 44869070 ~ 44869140 (+)
galnt18a LOC106573212 coding downstream 272403 44961201 ~ 45062434 (+)
G47925 NA non-coding upstream 429 44687816 ~ 44688015 (+)
G47922 NA non-coding upstream 4756 44683327 ~ 44683688 (+)
G47915 NA non-coding upstream 29088 44659152 ~ 44659356 (+)
G47905 NA non-coding upstream 35728 44652433 ~ 44652716 (+)
G47903 NA non-coding upstream 37432 44650581 ~ 44651012 (+)
G47906 NA non-coding downstream 23422 44712220 ~ 44713834 (+)
G47980 NA non-coding downstream 86038 44774836 ~ 44776546 (+)
G47984 NA non-coding downstream 104048 44792846 ~ 44793104 (+)
G48005 NA non-coding downstream 151270 44840068 ~ 44840557 (+)
G48010 NA non-coding downstream 156321 44845119 ~ 44845375 (+)
G47667 LOC106573189 other upstream 544728 44139091 ~ 44143716 (+)
G47595 NA other upstream 640433 44044670 ~ 44048011 (+)
G47467 NA other upstream 885481 43802513 ~ 43802963 (+)
G47212 NA other upstream 1075390 43612430 ~ 43613054 (+)
G45870 NA other upstream 1796851 42891218 ~ 42891593 (+)
G47910 LOC106573211 other downstream 100832 44789630 ~ 44791090 (+)
LOC110523657 NA other downstream 382556 45071354 ~ 45072433 (+)
G48976 NA other downstream 456480 45145278 ~ 45146640 (+)
G49142 NA other downstream 725908 45414706 ~ 45418180 (+)

Expression


Co-expression Network