G47906


Basic Information

Item Value
gene id G47906
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44712220 ~ 44713834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53570
TCccacattacattttttatttagaattcatcaAGCCacagattcccacaataagttttgaAAGTACTATCCCATAAAACTGGTACTGAAAGCCTATTAGTATAactttatttcaacaaggaacacagactgagaccaaggtctcttttacagcccTGCGTACACGTTTACACATACAGTTCAGGTACAATGATTAAGAAATTGCACAAGACAAACAAAACCATCACAGATAACACAAAAAaataaatgtttaaaatgggCAAGTGGGACAAGAGTCTCAAGTTTAAGTTGAGTCTGCAGGCTATTCCATAGGCAAGGAGCGtaacaggaaaaggcagccatACCCAACTCTGGAAACCGATTGGGCCTCAAGTGTAATCCATGCTTGAGACTTGTTTTTTAGGAATTCTAATTCTAATATTGATGAGTGATGATAAGAAGGTAGTTTATTCAGAAGTGCTTTATAGACAAACACGAGAGCATGTTGTTCTCGTCTCATGGACAGCGAAGTCCAACGCACattttgatataaaacacagtggtgagttctgtagctaACATCCGTAATAATCCTAAATGCGCAATGATAAGTAGCATCCAGCGATTTAAGTGTTGATGCCGTAGCATGCACGTTGATAATATCCCCATAATCTATAACAGACATAAAAGTAGCTTGCACAATTTTTCTTCTATTTGTAGAGGACAAACATGTTCTGTTTCTAGAGGAAGCCTAGCTTGATTTTTTGCCGTTTACAAAGTTTGTCAATATGCATTTTAAAAGACAGGGATATGGTTGGATGATAAACTAAGTATATTTATATGCAGAGACCTTATTCAGGTCTCTGCATAGGTCTCTTGAACCTATTAAAAATCATAAACTGTGTTCTTTTCAGCTGTACAAAAGACCCTTGTAATATCTTAAAATCTGTCTCCAATAGTGATAATGCTTGGTCAGCCGTTGAAGCGATAGAGTacatgacagtgtcatcagcatatAAATGAATTTGACACTTTCTTATCTCATCACCGATATTGTTTATGTAGAGAGTGAACACTATAACATCAGAGATTCCCCAtcaatggtgtgtgtaatgagTCCTATATTACATATTCACATAAGCAAATTGTGacaaatgaaaaacaaaaatgtgttaaGCACAAATACATATAGATAGTTGAATTAAGTAGAATAATTACAATATTACATGTTATATTACACCAATTCTATTTGATCTCTGTCTAGAATAGCTTCCTCCTAACTAGTTCCCTCTCAGTCTAACACCCAGTCTGTAGGGTTTGGGGGACAGGGTTACACCAAACACAGGGGTGTAGTCAGGTTCCCCCGCATCCTCAGGCCAGACAAACTTGAAGCGTCGCAGCAGAGTGACCATGATCAGGAAGAGCTCCATGCGAGCGAGTCCTTCTCCAAGACACATTCGGGgcc

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53570 True 1444 lncRNA 0.38 2 44712220 44713834

Neighbor

gene id symbol gene type direction distance location
cnot1 LOC106573200 coding upstream 30264 44663927 ~ 44681956 (+)
kdm7ab LOC106573199 coding upstream 64799 44598632 ~ 44647421 (+)
LOC118964638 NA coding upstream 243761 44456457 ~ 44468459 (+)
LOC110523481 LOC106573277 coding upstream 344190 44360935 ~ 44368030 (+)
LOC110523475 LOC106573196 coding upstream 351962 44276332 ~ 44360258 (+)
e2f4 LOC106573204 coding downstream 6830 44720664 ~ 44748569 (+)
LOC110523610 LOC106573209 coding downstream 35924 44749758 ~ 44787067 (+)
vac14 vac14 coding downstream 143074 44856908 ~ 44886958 (+)
trnag-gcc NA coding downstream 155236 44869070 ~ 44869140 (+)
galnt18a LOC106573212 coding downstream 247367 44961201 ~ 45062434 (+)
G47926 NA non-coding upstream 23422 44688444 ~ 44688798 (+)
G47925 NA non-coding upstream 24205 44687816 ~ 44688015 (+)
G47922 NA non-coding upstream 28532 44683327 ~ 44683688 (+)
G47915 NA non-coding upstream 52864 44659152 ~ 44659356 (+)
G47905 NA non-coding upstream 59504 44652433 ~ 44652716 (+)
G47980 NA non-coding downstream 61002 44774836 ~ 44776546 (+)
G47984 NA non-coding downstream 79012 44792846 ~ 44793104 (+)
G48005 NA non-coding downstream 126234 44840068 ~ 44840557 (+)
G48010 NA non-coding downstream 131285 44845119 ~ 44845375 (+)
G48033 NA non-coding downstream 188719 44902553 ~ 44902790 (+)
G47667 LOC106573189 other upstream 568504 44139091 ~ 44143716 (+)
G47595 NA other upstream 664209 44044670 ~ 44048011 (+)
G47467 NA other upstream 909257 43802513 ~ 43802963 (+)
G47212 NA other upstream 1099166 43612430 ~ 43613054 (+)
G45870 NA other upstream 1820627 42891218 ~ 42891593 (+)
G47910 LOC106573211 other downstream 75796 44789630 ~ 44791090 (+)
LOC110523657 NA other downstream 357520 45071354 ~ 45072433 (+)
G48976 NA other downstream 431444 45145278 ~ 45146640 (+)
G49142 NA other downstream 700872 45414706 ~ 45418180 (+)

Expression


Co-expression Network