G48005


Basic Information

Item Value
gene id G48005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44840068 ~ 44840557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53676
AAAGAATATATGAAcgctttggaattacctggatttctgcataaattggatatcaaatttgatctgatcttcatctaagtcagaacaatagacaaacatagtgtgcttaaactaataacacacaaattattgtatttttcttgtctatattgaatacatcatttaaagattcacagtgtaggttggaacaagtatgtgaacccctaggctaatgacttctccaaaagctaattggagtcaggagtcagctaacctggagtccaatcaatgagacaagattagagatgttggttagagctgccctgccctataaaaaacactcacaaaatttgagtttgctattcacaagaagcattgcctgatgtgaaccatgcctcgaactaaagagatctcagaagaactaagattaagaattgttgacttgcataaagctggaaagggttacaaaagtatctctaaaagccttgatgtgcATCAGTCCatgtgtaac

Function

NR:

description
uncharacterized protein LOC110951677 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53676 True 490 lncRNA 0.47 1 44840068 44840557

Neighbor

gene id symbol gene type direction distance location
LOC110523610 LOC106573209 coding upstream 53001 44749758 ~ 44787067 (+)
e2f4 LOC106573204 coding upstream 91499 44720664 ~ 44748569 (+)
cnot1 LOC106573200 coding upstream 158112 44663927 ~ 44681956 (+)
kdm7ab LOC106573199 coding upstream 192647 44598632 ~ 44647421 (+)
LOC118964638 NA coding upstream 371609 44456457 ~ 44468459 (+)
vac14 vac14 coding downstream 16351 44856908 ~ 44886958 (+)
trnag-gcc NA coding downstream 28513 44869070 ~ 44869140 (+)
galnt18a LOC106573212 coding downstream 120644 44961201 ~ 45062434 (+)
LOC110523657 NA coding downstream 231411 45071354 ~ 45072433 (+)
LOC110523687 LOC106573214 coding downstream 252425 45092982 ~ 45115348 (+)
G47984 NA non-coding upstream 46964 44792846 ~ 44793104 (+)
G47980 NA non-coding upstream 63522 44774836 ~ 44776546 (+)
G47906 NA non-coding upstream 126234 44712220 ~ 44713834 (+)
G47926 NA non-coding upstream 151270 44688444 ~ 44688798 (+)
G47925 NA non-coding upstream 152053 44687816 ~ 44688015 (+)
G48010 NA non-coding downstream 4562 44845119 ~ 44845375 (+)
G48033 NA non-coding downstream 61996 44902553 ~ 44902790 (+)
G48035 NA non-coding downstream 65248 44905805 ~ 44906024 (+)
G48039 NA non-coding downstream 72452 44913009 ~ 44913233 (+)
G48896 NA non-coding downstream 223860 45064417 ~ 45064653 (+)
G47910 LOC106573211 other upstream 48978 44789630 ~ 44791090 (+)
G47667 LOC106573189 other upstream 696352 44139091 ~ 44143716 (+)
G47595 NA other upstream 792057 44044670 ~ 44048011 (+)
G47467 NA other upstream 1037105 43802513 ~ 43802963 (+)
G48976 NA other downstream 304721 45145278 ~ 45146640 (+)
G49142 NA other downstream 574149 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 894496 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 1151716 45992273 ~ 45992891 (+)

Expression


Co-expression Network