G48033


Basic Information

Item Value
gene id G48033
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44902553 ~ 44902790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53704
ttaattccttacatgctgactagaccggaCACGTCTCAAAATAAATGTAGGAATCCATATTATTCAAtgattgcacccacactgcttgcgcgcgccaacgagcgtctgcgatgccaagggctaaaatagaactcctttctatttctgacgcagatcgcgctgaaagtcctgcctctcccatctccttattggtttatagaagcaggtatccacatgccatctccttattggttatacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53704 True 238 lncRNA 0.45 1 44902553 44902790

Neighbor

gene id symbol gene type direction distance location
vac14 vac14 coding upstream 15595 44856908 ~ 44886958 (+)
trnag-gcc NA coding upstream 33413 44869070 ~ 44869140 (+)
LOC110523610 LOC106573209 coding upstream 115486 44749758 ~ 44787067 (+)
e2f4 LOC106573204 coding upstream 153984 44720664 ~ 44748569 (+)
cnot1 LOC106573200 coding upstream 220597 44663927 ~ 44681956 (+)
galnt18a LOC106573212 coding downstream 58411 44961201 ~ 45062434 (+)
LOC110523657 NA coding downstream 169178 45071354 ~ 45072433 (+)
LOC110523687 LOC106573214 coding downstream 190192 45092982 ~ 45115348 (+)
LOC110523812 facr1 coding downstream 524880 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 549246 45452036 ~ 45454827 (+)
G48010 NA non-coding upstream 57178 44845119 ~ 44845375 (+)
G48005 NA non-coding upstream 61996 44840068 ~ 44840557 (+)
G47984 NA non-coding upstream 109449 44792846 ~ 44793104 (+)
G47980 NA non-coding upstream 126007 44774836 ~ 44776546 (+)
G47906 NA non-coding upstream 188719 44712220 ~ 44713834 (+)
G48035 NA non-coding downstream 3015 44905805 ~ 44906024 (+)
G48039 NA non-coding downstream 10219 44913009 ~ 44913233 (+)
G48896 NA non-coding downstream 161627 45064417 ~ 45064653 (+)
G48912 NA non-coding downstream 170117 45072907 ~ 45073111 (+)
G48913 NA non-coding downstream 170393 45073183 ~ 45073507 (+)
G47910 LOC106573211 other upstream 111463 44789630 ~ 44791090 (+)
G47667 LOC106573189 other upstream 758837 44139091 ~ 44143716 (+)
G47595 NA other upstream 854542 44044670 ~ 44048011 (+)
G47467 NA other upstream 1099590 43802513 ~ 43802963 (+)
G48976 NA other downstream 242488 45145278 ~ 45146640 (+)
G49142 NA other downstream 511916 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 832263 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 1089483 45992273 ~ 45992891 (+)

Expression


Co-expression Network