G48035


Basic Information

Item Value
gene id G48035
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44905805 ~ 44906024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU53706
ctattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaggcagggattttttactaggattaaatgtcaggaattgtgaaacagagttgaaatgtatttggctaagatgtatgtaaatgTATATTACCGTTTTagcatttttcttccactttgacattagagcaTTTAAATCAATTTTGATGCCActttaacacaataaaat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53706 True 220 lncRNA 0.43 1 44905805 44906024

Neighbor

gene id symbol gene type direction distance location
vac14 vac14 coding upstream 18847 44856908 ~ 44886958 (+)
trnag-gcc NA coding upstream 36665 44869070 ~ 44869140 (+)
LOC110523610 LOC106573209 coding upstream 118738 44749758 ~ 44787067 (+)
e2f4 LOC106573204 coding upstream 157236 44720664 ~ 44748569 (+)
cnot1 LOC106573200 coding upstream 223849 44663927 ~ 44681956 (+)
galnt18a LOC106573212 coding downstream 55177 44961201 ~ 45062434 (+)
LOC110523657 NA coding downstream 165944 45071354 ~ 45072433 (+)
LOC110523687 LOC106573214 coding downstream 186958 45092982 ~ 45115348 (+)
LOC110523812 facr1 coding downstream 521646 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 546012 45452036 ~ 45454827 (+)
G48033 NA non-coding upstream 3015 44902553 ~ 44902790 (+)
G48010 NA non-coding upstream 60430 44845119 ~ 44845375 (+)
G48005 NA non-coding upstream 65248 44840068 ~ 44840557 (+)
G47984 NA non-coding upstream 112701 44792846 ~ 44793104 (+)
G47980 NA non-coding upstream 129259 44774836 ~ 44776546 (+)
G48039 NA non-coding downstream 6985 44913009 ~ 44913233 (+)
G48896 NA non-coding downstream 158393 45064417 ~ 45064653 (+)
G48912 NA non-coding downstream 166883 45072907 ~ 45073111 (+)
G48913 NA non-coding downstream 167159 45073183 ~ 45073507 (+)
G48920 NA non-coding downstream 172347 45078371 ~ 45078666 (+)
G47910 LOC106573211 other upstream 114715 44789630 ~ 44791090 (+)
G47667 LOC106573189 other upstream 762089 44139091 ~ 44143716 (+)
G47595 NA other upstream 857794 44044670 ~ 44048011 (+)
G47467 NA other upstream 1102842 43802513 ~ 43802963 (+)
G48976 NA other downstream 239254 45145278 ~ 45146640 (+)
G49142 NA other downstream 508682 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 829029 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 1086249 45992273 ~ 45992891 (+)

Expression


Co-expression Network