G48976


Basic Information

Item Value
gene id G48976
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45145278 ~ 45146640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU54725
ctactgggtcccaggattaagcaccgcactgcacggagccatgcactgagtgtggagcaaatggtttgtgtggccttgcgcttttttgctagtggagccttcctgtactcagtgggggatgcagaacagctgaacaaggccacaatttgccgcacaataaggagtgtgtgtctggctatcaaagcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagaggagttctataggattgcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcccgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccagga
>TU54730
ctactgggtcccaggattaagcaccgcactgcacggagccatgcactgagtgtggagcaaatggtttgtgtggccttgcgcttttttgctagtggagccttcctgtactcagtgggggatgcagaacagctgaacaaggccacaatttgccgcacaataaggagtgtgtgtctggctatcaaagcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagaggagttctataggattgcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcccgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctgaaggcacgctttcactgccttcacaaattaagggtcagccctgttagggcatgtgatattactgtggcttgtgctgtcctccacaatgtggcctgcctgaggaaggagagggcccccagagtgccaccagccatggactgggacaatccggcaatcttccctgatgacgacagtggtcggctgctgagggaccaatatgtgttgaattattttagttagtatgtgtgctttcaattttggttaaatatgtcctgcggtggcagaggaatttgggtttttttgggttcgttttttgacgaatttggcctcttatgatgtttgtgcggtatactgtgtgtaatacaaggctgcagggaggctactgcatccattcatttgtctgttcagttgatgtgtatggatttgtcctgcatttattttagtgtgcagacatgcagggtgtgttatacacattcaaaggtctgtatatgta
>TU54728
gcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagaggagttctataggattgcaggtttccccaatgtcattggtgcagtggactgcacacacataaggataaaagccccctcaggtgcccatgaggccgattttgtgaataggaaatcctttcacagcattaatgttcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcccgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctgaaggcacgctttcactgccttcacaaattaagggtcagccc
>TU54727
caggtttccccaatgtcattggtgcagtggactgcacacacataaggataaaagccccctcaggtgcccatgaggccgattttgtgaataggaaatcctttcacagcattaatgttcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcccgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctgaaggcacgctttcactgccttcacaaattaagggtcagccc
>TU54731
tgaggccgattttgtgaataggaaatcctttcacagcattaatgttcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcccgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctgaaggcacgctttcactgccttcacaaattaagggtcagccctgttagggcatgtgatattactgtggcttgtgctgtcctccacaatgtggcctgcctgaggaaggagagggcccccagagtgccaccagccatggactgggacaatccggcaatcttccctgatgacgacagtggtcggctgctgagggaccaatatgtgttgaattattttagttagtatgtgtgctttcaattttggttaaatatgtcctgcggtggcagaggaatttgggtttttttgggttcgttttttgacgaatttggcctcttatgatgtttgtgcggtatactgtgtgtaatacaaggctgcagggaggctactgcatccattcatttgtctgttcagttgatgtgtatggatttgtcctgcatttattttagtgtgcagacatgcagggtgtgttatacacattcaaaggtctgtatatgta

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54725 False 481 TUCP 0.46 3 45145278 45146133
TU54730 False 988 TUCP 0.49 3 45145278 45146640
TU54728 False 490 lncRNA 0.43 4 45145461 45146209
TU54727 False 414 lncRNA 0.52 3 45145606 45146209
TU54731 True 775 lncRNA 0.48 3 45145676 45146640

Neighbor

gene id symbol gene type direction distance location
LOC110523687 LOC106573214 coding upstream 30113 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 73028 45071354 ~ 45072433 (+)
galnt18a LOC106573212 coding upstream 83027 44961201 ~ 45062434 (+)
vac14 vac14 coding upstream 258503 44856908 ~ 44886958 (+)
trnag-gcc NA coding upstream 276321 44869070 ~ 44869140 (+)
LOC110523812 facr1 coding downstream 281030 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 305396 45452036 ~ 45454827 (+)
LOC110523825 LOC106573223 coding downstream 319856 45466496 ~ 45471513 (+)
wt-t1a wt-t1a coding downstream 995366 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 1103079 46249719 ~ 46267255 (+)
G48920 NA non-coding upstream 66795 45078371 ~ 45078666 (+)
G48913 NA non-coding upstream 71954 45073183 ~ 45073507 (+)
G48912 NA non-coding upstream 72350 45072907 ~ 45073111 (+)
G48896 NA non-coding upstream 80808 45064417 ~ 45064653 (+)
G48039 NA non-coding upstream 232228 44913009 ~ 44913233 (+)
G49041 NA non-coding downstream 99403 45246043 ~ 45246327 (+)
G49042 NA non-coding downstream 99787 45246427 ~ 45246657 (+)
G49044 NA non-coding downstream 103118 45249758 ~ 45250231 (+)
G49050 NA non-coding downstream 110169 45256809 ~ 45261993 (+)
G49093 NA non-coding downstream 176584 45323224 ~ 45324573 (+)
G47910 LOC106573211 other upstream 354371 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 397456 44720664 ~ 44748569 (+)
G47667 LOC106573189 other upstream 1001745 44139091 ~ 44143716 (+)
G47595 NA other upstream 1097450 44044670 ~ 44048011 (+)
G49142 NA other downstream 268066 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 588413 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 845633 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1711268 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 2080606 47227246 ~ 47260224 (+)

Expression


Co-expression Network