G49050


Basic Information

Item Value
gene id G49050
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45256809 ~ 45261993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU54809
ttttttcaccttgtcggctccgggattttaaCTAGCGACCTTccagttactggtccaatgctctaacagcggggctacctgccgcccagcaATAGTCAAATTGTTGTGGTAATGAATACAGTTCTACAGGGACATGCATTGGAAAAGGCATTCTGGTGATCTCTTCCACCATTTTCTTAGGCTTTTTGGTTTAGCTTCTGTTAAACCTTTTCTTCACTGGAAAGTCATGACCAAAGGCACTTTATGCTACAGTGCAAGGGACAATTGCACGTCTGAAATGTCTCCAGTGTTTTTGGTTTTTGAAAGGCAAGGCAAAGTTATTACTGCTATTACACACGGATTGTAATAATCTACGCATGATTTACCAGTTATTTTGTACAACACGGTGAAATAGGTGCACATGTAGAACCACTAATAGTTAACCGTGTATTTATAATGGCCGACATGACGCGTCACAAAATGTTATGTATTTTTCGATCCAAGCAAACCATTGGTGGAAAGTTACTCACTAAGGCACTGTACACATAACACTGGGATGTATGGAGATTACAAGGCTGTCCTCCAGCTCAGGAAAGATCTCACAGCTTGAGTGGTGGAGATACAGTATCTGTAAGGATCCCATTCCCTACCACCACGGTTAATGTGCCCAATAGCGTAGGTCACCGATTGACAAGCAAAATAAGGCTGAATAGCATTCAGAACCAGGGAAACACAGATTAATATATGGGAGTGTTTTTGACTTCTGTGTTCCTCAGTCACTAAAAAGAGCAGGTTCATTCAACAAGTCTACTCCACCCTGCAATAACCATACAGAGGAACTAAGTGCTTTGGGATGGGTGACGACGGTAGTAGAGTGTCCATTTTGAATGTTCAATATGTGTATTCTATGATTTCTTTGCTTCATCGTCATACAGGCTAAAACCTTAGCAGCTCAGAGAAAAGAGAACATAGGAGGAATCTCTGATCTGTACACATTGTCTTGCTGTGTTCTCACAGTGCTTTTCCTCTTCGAATAAAATCAcgttttattggtcgcatacacatatcgTGCAGATGTTATCgggggtgtagcgaaatgcttatgttcctagctccaacagtgcagtaatacctaacaatacaggTTTATTTTTAGTTGGGCACAGGAGATATGATGCAGATATGAGAGAGCTGTGCTGCAAAGTGGTACCTGAATCatcatatattttatttatagTTTCAAAGTGTCCCTGGAATTATAACTATTACTGGTCTTCATTATAGTTTAGTATTTGCGTTGTTATCCAAAATGTACAAAATGTAAAACCTACATATTTTTTCTTTGGAAAATGTTTGTGTGATAGTGATGTTCACCAAGctacatgtacactacatgaccaaaagtatgtggacacctgctcgttgaacatctcattccaaaatcacgggcattcatatggagttggcCCCCTCTttgctccactcttctgggaaggctttccactagatgttggaacattgctgcagggactttcttccattcagccacaagggcattagtgaggtcgggcactgatgtcgggagattaggcctggctctcagtaggcgttccaattcatcctaaaggtgttcgatggggttgaggtcaaggctctttgcaggccagtcaagtttttccacaccaatctcaacaaaaaaaaatccgtatggacctcgctttatgaacgggagcattgtcatgctgaaacaggaaaagggcattcccaaactgttgccacaaagttggaagcacagaatcgtctagaactctagaatgtcattgcatgctgcagcattaatatttcccttcactggaactaaggggcctatcccAAACCAGGAATAACAGCCCAGACCACTATTCCACCTCCAccaaccaaactttacagttggcactatacattggggcaggtaTCGTTCTCCTGGtaaccgccaaacccagattcatccgttggactgccagaagGTGAAGCATAATTCATCATCccagagaacgagtttccactgctccattgtcaaatggcggcgagctttacaccactccagctgacgctagacattgcacatggtgatcttaggcttgtgtgcggctgctcggccatggaaacccatttcatgaagctccctatgaacagttattgtgctgacgttgcttccagaggcagtttggaactcggtagtgagtgttgcaaccgaggacagacaattgttacgagctacgtgcttcagcactcggcggtccagttctgtgagcttgtgtggcctaccactaaTTTGATGGGGTGTCCACGtacgtttgtatatatagtgtatgtagtaACTGTTTGTATAGTTTTTCTATTTATCTAATTAAGAAAGGCTATTATGATCTGTAATTGGTTGACATTGGTGATGACTACAGTATAAAACGCTGGAAACTGATAGTAGTTTCCAAATGTAATCCACAGAACACCTCCCTATGTTACGCAATGCCCCTTCATATGTACACTTTCTACACTACAGACCTGAACTAGTCTGGAAAAATGGCACATGACACAACTATACCACAGATTGACAGCTGCACTCATACAAATATACATTAAAAAGACAAAAATATAATGATAATATTATCCGTGATAGACTTCACCCACAATGTAACCAAAGGACATTGTGGGTGGGATTTGTGTAGAGGCACAGCCACTTTCCATACGGTTGTCAAGTAAGTCATTCTGAAGGCGTGTTTCACTGGGCGGTTGCCTTGTGTCCTCCCCCACAACCCTGACAATACTCAGGGTCTGTCCTTCAATGTCTTCCTTCCATCCTTCATAAGCTACATGTCCTTCAGGTTAGCGAGATCTATGTGATAGTTTGTCCCAGTTCTGAATGAAGCATGTTCACACTGAGTgtcagggctagattcaatcagattgaCATCCACATAGcggttgttttggcggtgtcaGGAGGTGGAACTGCAGAGAGCTGTCCAATCCACAAGCGGCTCGTTGCGTTATTTTATTGCGGACACCGCCAGTGGATGAAACGAAATCACACCCGACTATAATCTGACAAATCCCATACAGCCGCGTTGGAAGTTCATTCAGCAACGTTACAAGTTCAAACACTCGAAATAGACTGATAAGCTATAAATCCCCCCCATCCAAATTAACATGAAAACATGCGATTAGCCTAACATCAACGGTTTGACATTTGAGAGTCATTACTTCTAACATCGATAGAGTCTACACTTCCTTGAACTCCTAACGCGGTAGGGATATTAAGGAAGGGAGGGTTGCTGCCACACAAGAGCAGCCGCTCACCGATATTTCAGCTCATACcgcagttacacctccaacaccGCCAAAACATCTGCTATGCGGATATCGGTTAACGTTCGATCTGATTGAAATCTAGGCCTCGGTCTCTTATTCCTTGACTAGCCGGTAGATGTGATGTTGAGCTCCGTGGTCGCTGTTCGACACCTCAAACACACACGCCATGCACAGCAGCgtctcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54809 True 3514 lncRNA 0.44 2 45256809 45261993

Neighbor

gene id symbol gene type direction distance location
LOC110523687 LOC106573214 coding upstream 141461 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 184376 45071354 ~ 45072433 (+)
galnt18a LOC106573212 coding upstream 194375 44961201 ~ 45062434 (+)
vac14 vac14 coding upstream 369851 44856908 ~ 44886958 (+)
LOC110523812 facr1 coding downstream 165677 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 190043 45452036 ~ 45454827 (+)
LOC110523825 LOC106573223 coding downstream 204503 45466496 ~ 45471513 (+)
wt-t1a wt-t1a coding downstream 880013 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 987726 46249719 ~ 46267255 (+)
G49044 NA non-coding upstream 6578 45249758 ~ 45250231 (+)
G49042 NA non-coding upstream 10152 45246427 ~ 45246657 (+)
G49041 NA non-coding upstream 10482 45246043 ~ 45246327 (+)
G48976 NA non-coding upstream 110169 45145278 ~ 45146640 (+)
G48920 NA non-coding upstream 178143 45078371 ~ 45078666 (+)
G49093 NA non-coding downstream 61231 45323224 ~ 45324573 (+)
G49092 NA non-coding downstream 62875 45324868 ~ 45326400 (+)
G49095 NA non-coding downstream 65112 45327105 ~ 45327380 (+)
G49102 NA non-coding downstream 84530 45346523 ~ 45348659 (+)
G49103 NA non-coding downstream 88941 45350934 ~ 45352308 (+)
G47910 LOC106573211 other upstream 465719 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 508804 44720664 ~ 44748569 (+)
G47667 LOC106573189 other upstream 1113093 44139091 ~ 44143716 (+)
G49142 NA other downstream 152713 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 473060 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 730280 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1595915 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1965253 47227246 ~ 47260224 (+)

Expression


Co-expression Network