G49093


Basic Information

Item Value
gene id G49093
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45323224 ~ 45324573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU54858
ttttctacattgtagaataatagtgaagacatcaacactatgaaataacacacatggaatcatgtagtaataattaaagtgttaaacacatctaaatatattttatatttgagattcttcaaagtggccaccctttgccaaggttttttttaaatacatttttatttatctagggaagccagttaagaacaaattcttatttacaatgacggcctacaccagccaaaccctcccctaacaacGCTGAGACAATTGTGCGGCACCCTATGGCactcccgatcatggccggttgtgatacagcccgggatcgaaccaggatctgtagtgacgcctctagcactgagatagtgccttagaccgctgcggcaCTCAGGGTAGGTTACTtcctaaatgtaatccgttacagttacctgtccaaaattgtaatcagtaacataagttttggattacccaaactcagtaacgtaatgtGATTACATTcggttacttttagattactttccccttaagaggcattagaagaagacaaaaatgtatgttaccaattgaaccacatctattgcaggataaatcaatgttaaattttacatagctggccatatatggatgttacattttactttatgggttggttatgtaggcttcttctaagcCATCAcgttctactacatataataatacaattcaattatatctttacattaaaaaccaaagtctatcagaattccagtcattccaataaatgttataccccttgatcttcaagaataggacttggaaatatggaagtatagatttgccaaattgttttacctgagcataaccccaaaacaaaggatttattagccagccctactctgtttatgattttgttgtcatggaggactgattcgagttgaaaaataaatgctgctctcATGGAATTGCTTGGTTTGAGCattactgaaaagtgctatttacatgtgaaaaatgaatacCATATGCatcatttgctataggcctattgtttcaCTTTTTGTTGGcaacactttgatatcttgataatatgcagctgttaaAAGAGCAAATCCACAGTGAAACAATAAATAAACGGCCATCCCGCctttgttttggtaaaaagctgagcgataggcctggagaaatgtaaccactctcagaataacagacagagctatggatgcaaggactgaccatccatgatatcaacatgattgTTTTAGCCATGTTATGAGGTTATACAGTGttagtttacatttacattgtttacaaacattggagaaaacaagcttatattttgggttcttatGGAGTGTGACAGTTAAACTAAgatcatgaggcatttctaagtta
>TU54859
ttttctacattgtagaataatagtgaagacatcaacactatgaaataacacacatggaatcatgtagtaataattaaagtgttaaacacatctaaatatattttatatttgagattcttcaaagtggccaccctttgccaaggttttttttaaatacatttttatttatctagggaagccagttaagaacaaattcttatttacaatgacggcctacaccagccaaaccctcccctaacaacGCTGAGACAATTGTGCGGCACCCTATGGCactcccgatcatggccggttgtgatacagcccgggatcgaaccaggatctgtagtgacgcctctagcactgagatagtgccttagaccgctgcggcaCTCAGGGTAGGTTACTtcctaaatgtaatccgttacagttacctgtccaaaattgtaatcagtaacataagttttggattacccaaactcagtaacgtaatgtGATTACATTcggttacttttagattactttccccttaagaggcattagaagaagacaaaaatgtatgttaccaattgaaccacatctattgcaggataaatcaatgttaaattttacatagctggccatatatggatgttacattttactttatgggttggttatgtaggcttcttctaagcCATCAcgttctactacatataataatacaattca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54858 False 1350 lncRNA 0.35 1 45323224 45324573
TU54859 True 687 lncRNA 0.38 1 45323224 45323910

Neighbor

gene id symbol gene type direction distance location
LOC110523687 LOC106573214 coding upstream 207876 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 250791 45071354 ~ 45072433 (+)
galnt18a LOC106573212 coding upstream 260790 44961201 ~ 45062434 (+)
vac14 vac14 coding upstream 436266 44856908 ~ 44886958 (+)
LOC110523812 facr1 coding downstream 103097 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 127463 45452036 ~ 45454827 (+)
LOC110523825 LOC106573223 coding downstream 141923 45466496 ~ 45471513 (+)
wt-t1a wt-t1a coding downstream 817433 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 925146 46249719 ~ 46267255 (+)
G49050 NA non-coding upstream 61231 45256809 ~ 45261993 (+)
G49044 NA non-coding upstream 72993 45249758 ~ 45250231 (+)
G49042 NA non-coding upstream 76567 45246427 ~ 45246657 (+)
G49041 NA non-coding upstream 76897 45246043 ~ 45246327 (+)
G48976 NA non-coding upstream 176584 45145278 ~ 45146640 (+)
G49092 NA non-coding downstream 295 45324868 ~ 45326400 (+)
G49095 NA non-coding downstream 2532 45327105 ~ 45327380 (+)
G49102 NA non-coding downstream 21950 45346523 ~ 45348659 (+)
G49103 NA non-coding downstream 26361 45350934 ~ 45352308 (+)
G49146 NA non-coding downstream 100019 45424592 ~ 45424793 (+)
G47910 LOC106573211 other upstream 532134 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 575219 44720664 ~ 44748569 (+)
G47667 LOC106573189 other upstream 1179508 44139091 ~ 44143716 (+)
G49142 NA other downstream 90133 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 410480 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 667700 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1533335 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1902673 47227246 ~ 47260224 (+)

Expression


Co-expression Network