G49092


Basic Information

Item Value
gene id G49092
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45324868 ~ 45326400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU54857
ttcatgatgtagtgacctggaatgcatttcaattaacaggcgtgccttgttaaaagttaatttatggaatttatttccttcttaatgcgtttgagcctatcagttgtgttgtgacatggtaggggtggtatacagatgatagccctatttggtaaaagaccaagtctatattatggcaagaacagctcaaataaacgaTGAgtaattacagtccatcattactttaagacatgaaggtcagtcaattcagaaaatgtcaagaactttgaaagtttcttcaagtgcagtcaaaccatcaagtgctgtgatgaaactggctctcatgaggacattagagcggtggaaatctgtcctttggtctgatgagtccaaatgagaGACTTTTGGTtctaaccactgtgtctttgtgagatggatgatctctgaatgtgtggttcccacagtgaagcatggaggaggtgtgagggtgtggggtgcattgctggtggcactgtcagtgatttatttagaattcaaggcacacttaaccagcatggttgcacagcattctgcagcgatacgccatcccacctggtttgagcttagtggggctatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggagagtgatggagtgctgcatcagattacctggcctccacagtcacccgacctgggaactccttaaagactgttggaaaagcattccaggtgaagttggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaattctatatgtgttatttcatagtttatgtcttcactattatgtagcaaacagtaaaaaataaagaaaaaccctggaatgagtaggtgtccaaacttttgactggtactgtacataagcAATATTTTTCTTTGAGAGGGAAAACACATTTGATAGGCTGAATCTATGGGTTTCTGTAGTGTTTATACGTGCTTTCCAGTGCAACTGACAAAGTGTTTTATATTATTCTATTTATAAGGCTGCATAACATTAAGGTTTTCTTGGTAAGGCATACAGTAATCTCTGAAGGCTGTCTCGGGAGACTAGCCTAAACAAACACTTGATGTACAACCCTCAGGTCCATAAGAGGTGTGGTCCTCAAGTAGGAATTGACAAGTCAAATTGATATACATATTCAAAAGTGTCATCATGCCACGTGCGGCCAAATCCAGTAGGGTAGTCACTAGTAGTGAAGTCACTTGTCTCTTCTGCCTGTGGAGCTGCATGGTGCTGTAGCCTTTTCCCTGCCCCAGAGGGCTGATTCTCTTCAGGTCCAGTGGAACTGGTAGCCTCTAGACAGTATCAGGCTCTCCGGGTCTCTGTCCTCAGCCCTCTCCTGCAGCCGCTGCTCCTCCAGCTGGCTGACCAgagtgtctctcctctccaccaccttCATGATCTCCGTCAGCATCTCCTGTTCCTCCGCCAGCTCACTGGAGCTCTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU54857 True 1533 lncRNA 0.44 1 45324868 45326400

Neighbor

gene id symbol gene type direction distance location
LOC110523687 LOC106573214 coding upstream 209520 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 252435 45071354 ~ 45072433 (+)
galnt18a LOC106573212 coding upstream 262434 44961201 ~ 45062434 (+)
vac14 vac14 coding upstream 437910 44856908 ~ 44886958 (+)
LOC110523812 facr1 coding downstream 101270 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 125636 45452036 ~ 45454827 (+)
LOC110523825 LOC106573223 coding downstream 140096 45466496 ~ 45471513 (+)
wt-t1a wt-t1a coding downstream 815606 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 923319 46249719 ~ 46267255 (+)
G49093 NA non-coding upstream 295 45323224 ~ 45324573 (+)
G49050 NA non-coding upstream 62875 45256809 ~ 45261993 (+)
G49044 NA non-coding upstream 74637 45249758 ~ 45250231 (+)
G49042 NA non-coding upstream 78211 45246427 ~ 45246657 (+)
G49041 NA non-coding upstream 78541 45246043 ~ 45246327 (+)
G49095 NA non-coding downstream 705 45327105 ~ 45327380 (+)
G49102 NA non-coding downstream 20123 45346523 ~ 45348659 (+)
G49103 NA non-coding downstream 24534 45350934 ~ 45352308 (+)
G49146 NA non-coding downstream 98192 45424592 ~ 45424793 (+)
G49183 ppfibp2 non-coding downstream 178389 45504789 ~ 45515074 (+)
G48976 NA other upstream 178228 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 533778 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 576863 44720664 ~ 44748569 (+)
G47667 LOC106573189 other upstream 1181152 44139091 ~ 44143716 (+)
G49142 NA other downstream 88306 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 408653 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 665873 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1531508 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1900846 47227246 ~ 47260224 (+)

Expression


Co-expression Network