G49102


Basic Information

Item Value
gene id G49102
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45346523 ~ 45348659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU54870
CCTGTTGGGCAGACTAAGGGTTCAGCTCGATAACGCTCCGATCTAATTATTCTACTAGAGACTTAGCATTCCCATTGCACTAAAAGCTAAATAAatgatggtcagagtgagctgacGCAACAGTGTCTTCTGTTCTCGCATGTGTAGAGTGAGATTTTTACTGATACCTGTTCGGTGGACTTTAAAGGGCCAGCTTCGTAACTCTCAAATCGAATGATTGGCTTTTGAATACTTGATCCAGCACTCCCGTTGCACTTAAATCATCAAAAATACAGTGAGTTGACTTAAGTctttttttcttctatttttacaaatgaggtttttttttactgaaactTGTTCGTCAGGCTTGAAGGGTTCAGAATGACAGCTTTCGAGTCGATCGATTGACTTTTGAAGGAGTCTACTTAACGAAGCATTCCCGTTGCactaaaaccaataacaacatggctGGAGTGAGTTGAGTCTTTCTTCTATTCTTATACTTCAAATGCATTTCAAATTACTGGTACCTGTTCGGCAGACATGTCAGGCTTGAAGGGTTCAGCTTGATAACTCACAGGACATTCGATTGGCGTTTGAATGAGTCTACTTGATGCAGTACTTCCATCGCACTAAaaccatttaaaaataaaaaaaaaacattgtcagAGTGAGCTGATATTTTTTTTAGGGTTGGGCTGGTCAGGACCACAAGGCACTGCAAGCGGCAGTCGCTTTCACCTTGTAATGATGCACAGGAGATGTTGGGGTAAGAGAAGAGACGCAAGACAGAGCAGACGGTTCAGGGACAGGGTGTATTGAAGTGATTTTAGGAACAAAGGTAGATCGATCCATCTGTAGAAAAAAAAGGGTTCATATCAGAAATGAGAGCAATCTCCAAAATCTCTAGCTCTTCATATCCCACCCCAAAAATACTGAGGAGATGCAAGCTGAATATAAGTAGGAGAGGAACAATTGGCCAGAGAAATATTCAACAGCTCAAACCTTTATCTCTTCTAATGAAGATATGAATGTTCACTCATTAGTATCATCACGGACCACTTTCATCATGCAGAGAGAAGTCACCTGACCTTTAATTCGCAGAGCTGTAACACCATGGAAACAAGACATGCTGCAAGAAAACAACCTCTGCCAACAAAtggatttaaaatggattatCAAGCTGTTGCCAGCCTTTAAAAACATGCTCCACTCTCAGTAAAATGTGAGTAGGTTTGACTGGTGACATTGCATCCTTCTAAACAGTCTGAGACGGTCAAACAGAACTTGTGTACAGGGTCAAACATACTGTGCCTCATTTCCTTAGATGGagttagacaggcaggcaggcaggcaggcaggcgaggGGTGGCGCTACACTTTCACCTTATACTCTTTCACTAGAGGAGTCTCGGACTCAGGAAACATAGAACGCAGAAGCACAGCTCTCTCCTTTATACTCTTCCTGTTAAATTCCCCGCTAGTTACGGTTTGCACTTTTTTCTTTAGAACAGCAACAAGGAAAGGAAAGAAAAGCAAGTGTGAAACTGCAGGAAGTTGGCAAATAAATACTGAACAGCAAACATAATCCATAAAGCTGATGATGTGGGCTTCTCTAGGCCCTTCCCTGTGGGGCCAGGAGAAGGTTGTTCTGGGTAATCTACGTCATCTGGGGATTCGGTGTGTGGAATCCACACTCTCTGCTGCACCAAGTCTGCGCGCGGAGAGGCCTGTGTTTGATCATCACGTGGAGGAGGACTCCAGGACCTTTTTGGAACGTGAAGGGGAGTCGGTTGCGCCACGGCTGCAGGCTCTTCTAAGAGTCGCATATAGATGGACGGCTGAAAgcagatatacacacacaaagcaaTGTGTAAAGCAGCACGGACCTCCAACCAGTAGAGGGCGAA

Function

NR:

description
F-actin-methionine sulfoxide oxidase MICAL2-like isoform X10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54870 True 1892 lncRNA 0.35 2 45346523 45348659

Neighbor

gene id symbol gene type direction distance location
LOC110523687 LOC106573214 coding upstream 231175 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 274090 45071354 ~ 45072433 (+)
galnt18a LOC106573212 coding upstream 284089 44961201 ~ 45062434 (+)
vac14 vac14 coding upstream 459565 44856908 ~ 44886958 (+)
LOC110523812 facr1 coding downstream 79011 45427670 ~ 45446413 (+)
LOC118964647 NA coding downstream 103377 45452036 ~ 45454827 (+)
LOC110523825 LOC106573223 coding downstream 117837 45466496 ~ 45471513 (+)
wt-t1a wt-t1a coding downstream 793347 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 901060 46249719 ~ 46267255 (+)
G49095 NA non-coding upstream 19143 45327105 ~ 45327380 (+)
G49092 NA non-coding upstream 20123 45324868 ~ 45326400 (+)
G49093 NA non-coding upstream 21950 45323224 ~ 45324573 (+)
G49050 NA non-coding upstream 84530 45256809 ~ 45261993 (+)
G49044 NA non-coding upstream 96292 45249758 ~ 45250231 (+)
G49103 NA non-coding downstream 2275 45350934 ~ 45352308 (+)
G49146 NA non-coding downstream 75933 45424592 ~ 45424793 (+)
G49183 ppfibp2 non-coding downstream 156130 45504789 ~ 45515074 (+)
G49221 NA non-coding downstream 221225 45569884 ~ 45570473 (+)
G49288 NA non-coding downstream 305738 45654397 ~ 45703120 (+)
G48976 NA other upstream 199883 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 555433 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 598518 44720664 ~ 44748569 (+)
G47667 LOC106573189 other upstream 1202807 44139091 ~ 44143716 (+)
G49142 NA other downstream 66047 45414706 ~ 45418180 (+)
G49335 LOC106573225 other downstream 386394 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 643614 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1509249 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1878587 47227246 ~ 47260224 (+)

Expression


Co-expression Network