G49619


Basic Information

Item Value
gene id G49619
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45476563 ~ 45479422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55440
gttcaacttaataaaaaaacatgtttccccatctcaagaggttaaatgaAAAACAAAAGATAATAGCAAGTGCCTATTGAGTGGCAAGTAAAGTAACCAGGTTtattgtaacagggttgacgatttcatcttaAGTCAGCCATGAATCCTCTTGTGAGAGGGTGAATGGAGGCTTGTTTTGTGCAACAGGGAGGGTCAAATGAATGCAAGCTTAAAAAAAAGgaaattgttaaaaaaaattctagcctgtctatcagTGGGTGACAGGGTTGACGTGTCATGCTCAACCTACAAGAGTAGAATCAGCTctcctgcttttacactatgatttgactataagatgttcaatgtttctccTTTTTATGTTccaaaaggaatagtttcaccatattacaacgagagttcagttcatgtaacagggttgaccttaaaatgagggacattttttattttattttttttaccttaaaaTAAATCACAAATCTCATGAATTTCAATAATAATATTCAGAAATGACTTtgacaaagcaacaaaataactagggctttcaATGAAGGTGAAAACTTGGATaaatgttggggttaagtgggttaaaatcacAGGAGGTACATGTCAAAATACagaattttggcactttagcaagtctttagGCATATTTAAAACCAGATGCATTGAATTATCAATGTGGTCTATATCATTTAATTTAAGAGTCTTTTAAAATTCCATATTTATGCACAATTTCTTCTTCAAATATCAAAAGGATGCAAAGGGGACTCATTTCGTGGAACAACCCATTACCTGGACACATCCATGATGCAAACAAGGCACTAAGACATACTGCAAACAAAACACACCAACACTTAATACAGCTAATTTGTATATGACCAATAAGAAACAGTTTTTTCTATGTTTCAACACATAATTTGCATATAATTGAATAGGCAGATGTAGTCCTTTAAGTAAGTCCCTTTAACAGTCACCAGAATGGAGGATCGCTTCTGTAACAGAATAAATACTAAGGGAAGCCTGCTCCCTGGGAGTTAGGTAGCCCAGTGAAGTGTCCATGCCCAGGTATAACCTGTACAGTGTGAGGATCCTATTGCAGGTTAATCTGCATCAACCCAGCACATCACAATATCTCACTAGGGtttcagagaggagaggggggctgGAGCTGTTCCAAACATCAAAGGCAGACCCATACTGGTCATAAGGGAAACCACCCTCTGACCTAATCCTGTAGACATGGGGAAGATAGAGAGCAAACAACCAGCCCAAGGTAATCTCAACCTGGTGGGAGAAACCACCAGCCTCGACCATGACCAATTCCCAACACTTCAATTTCTCAACcctgtgggggaggagagagagcaagccACTAGCCCCAGACATACCCAGTGAATCCTTAACAAGCCCAACGATTTTGTCCCTCTATCCAAATACTGTGTGGGGATAGCTGCCGCCAGGACCCAGGAGTACCTCCTGTTTCCCTCGACCCAGAGGACATGTTCCAGCCCCACAGCCCTCAACGAGATCTTCCTAATAACATATATTACCCAGAGCAGCCACCTCCACATGACCGACTCCTCCAACTgcaccacaatgacaaagcagcAGCGCATTTTTCTGGGTGCTGACTGGGCGTGGGCTGTGCTGGAGAGGCCCCCCAAGAACCCCTGCATCTAGATTGCCGTGCAGATCCTGCACCTGACAGAGGGGGGAGGGACGGCAGAGGACTTCCCCCCCGGAGGTATATACTGAATACATGCAAGATGGCCAAGACGGAGTCTGCTAATAGGAACAAGGCAGAGAGGATGGTGTATTTTTGCACCTCCATCGGTAATGACTGctactccctctttctcctattTGGCCGCAAGGGCGACTCTGGCAACATCTATGGGGTGCTGAGCAACAAATGTCACAATGCTATAGGAAGAATAAGAACAACCGGGCACTCATTGAGAATTTCTTTAAAAGGGTCCAGGTTCTTACGCCCACAGGAACGCTTACAGGCTTTCGTCACCAAGAGAGACGGTGACCCTTTAACTCTGCTCATCAAGTTTACCTGACCAGTATGATCGATAACCGTGCAACCATTTGTTACATTTCTTTGTGTCTATTGTAGTGTTTCAAATGGGGGGGAAGGACTGTTGTGCTTGGTGGGTTTATGCTTGCCTGGGACTCGGGGACCCAGTGTGCTGAAATTGGCCTGTGTCCATGTCTCGTGTAAACTACTGACCCATGACTGCTGACAGCTGCTCACACCCTTGTGTATAGTATTTATTTTAATGGGCTTAACACTTCACTGGCATCGCACCAGTGTGGAAATTCGCTTATCACTACCAAATGACATTAAAACCtttctacagcatacaatacagAAAATATGATTGGCCAtaaaatatttttgtattttctatgaTGGATTTAATGACTGATCACATTGCGGTATCTTCGCCCATAACATGATTCTAAGTCAATGACTGTTCATTTGATTAAGGTGGATTATTTTTTGTTAAAACTAGTGAAACAAAAatggaggagaaaaaaaaaagaggatGGAGTTGGAAATAAAATGTGTATTTCTGGATGTCTTGAGTTATCTTGTCTAGAAAAGGAATATGTATgttgagtagaggtcgaccgattatgatttttcaatgccgattaTTAAATGACC
>TU55445
gttcaacttaataaaaaaacatgtttccccatctcaagaggttaaatgaAAAACAAAAGATAATAGCAAGTGCCTATTGAGTGGCAAGTAAAGTAACCAGGTTtattgtaacagggttgacgatttcatcttaAGTCAGCCATGAATCCTCTTGTGAGAGGGTGAATGGAGGCTTGTTTTGTGCAACAGGGAGGGTCAAATGAATGCAAGCTTAAAAAAAAGgaaattgttaaaaaaaattctagcctgtctatcagTGGGTGACAGGGTTGACGTGTCATGCTCAACCTACAAGAGTAGAATCAGCTctcctgcttttacactatgatttgactataagatgttcaatgtttctccTTTTTATGTTccaaaaggaatagtttcaccatattacaacgagagttcagttcatgtaacagggttgaccttaaaatgagggacattttttattttattttttttaccttaaaaTAAATCACAAATCTCATGAATTTCAATAATAATATTCAGAAATGACTTtgacaaagcaacaaaataactagggctttcaATGAAGGTGAAAACTTGGATaaatgttggggttaagtgggttaaaatcacAGGAGGTACATGTCAAAATACagaattttggcactttagcaagtctttagGCATATTTAAAACCAGATGCATTGAATTATCAATGTGGTCTATATCATTTAATTTAAGAGTCTTTTAAAATTCCATATTTATGCACAATTTCTTCTTCAAATATCAAAAGGATGCAAAGGGGACTCATTTCGTGGAACAACCCATTACCTGGACACATCCATGATGCAAACAAGGCACTAAGACATACTGCAAACAAAACACACCAACACTTAATACAGCTAATTTGTATATGACCAATAAGAAACAGTTTTTTCTATGTTTCAACACATAATTTGCATATAATTGAATAGGCAGATGTAGTCCTTTAAGTAAGTCCCTTTAACAGTCACCAGAATGGAGGATCGCTTCTGTAACAGAATAAATACTAAGGGAAGCCTGCTCCCTGGGAGTTAGGTAGCCCAGTGAAGTGTCCATGCCCAGGTATAACCTGTACAGTGTGAGGATCCTATTGCAGGTTAATCTGCATCAACCCAGCACATCACAATATCTCACTAGGGtttcagagaggagaggggggctgGAGCTGTTCCAAACATCAAAGGCAGACCCATACTGGTCATAAGGGAAACCACCCTCTGACCTAATCCTGTAGACATGGGGAAGATAGAGAGCAAACAACCAGCCCAAGGTAATCTCAACCTGGTGGGAGAAACCACCAGCCTCGACCATGACCAATTCCCAACACTTCAATTTCTCAACcctgtgggggaggagagagagcaagccACTAGCCCCAGACATACCCAGTGAATCCTTAACAAGCCCAACGATTTTGTCCCTCTATCCAAATACTGTGTGGGGATAGCTGCCGCCAGGACCCAGGAGTACCTCCTGTTTCCCTCGACCCAGAGGACATGTTCCAGCCCCACAGCCCTCAACGAGATCTTCCTAATAACATATATTACCCAGAGCAGCCACCTCCACATGACCGACTCCTCCAACTgcaccacaatgacaaagcagcAGCGCATTTTTCTGGGTGCTGACTGGGCGTGGGCTGTGCTGGAGAGGCCCCCCAAGAACCCCTGCATCTAGATTGCCGTGCAGATCCTGCACCTGACAGAGGGGGGAGGGACGGCAGAGGACTTCCCCCCCGGAGGTATATACTGAATACATGCAAGATGGCCAAGACGGAGTCTGCTAATAGGAACAAGGCAGAGAGGATGGTGTATTTTTGCACCTCCATCGGTAATGACTGctactccctctttctcctattTGGCCGCAAGGGCGACTCTGGCAACATCTATGGGGTGCTGAGCAACAAATGTCACAATGCTATAGGAAGAATAAGAACAACCGGGCACTCATTGAGAATTTCTTTAAAAGGGTCCAGGTTCTTACGCCCACAGGAACGCTTACAGGCTTTCGTCACCAAGAGAGACGGTGACCCTTTAACTCTGCTCATCAAGTTTACCTGACCAGTATGATCGATAACCGTGCAACCATTTGTTACATTTCTTTGTGTCTATTGTAGTGTTTCAAATGGGGGGGAAGGACTGTTGTGCTTGGTGGGTTTATGCTTGCCTGGGACTCGGGGACCCAGTGTGCTGAAATTGGCCTGTGTCCATGTCTCGTGTAAACTACTGACCCATGACTGCTGACAGCTGCTCACACCCTTGTGTATAGTATTTATTTTAATGGGCTTAACACTTCACTGGCATCGCACCAGTGTGGAAATTCGCTTATCACTACCAAATGACATTAAAACCtttctacagcatacaatacagAAAATATGATTGGCCAtaaaatatttttgtattttctatgaTGGATTTAATGACTGATCACATTGCGGTATCTTCGCCCATAACATGATTCTAAGTCAATGACTGTTCATTTGATTAAGGTGGATTATTTTTTGTTAAAACTAGTGAAACAAAAatggaggagaaaaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55440 False 2683 lncRNA 0.42 2 45476563 45479422
TU55445 True 2556 lncRNA 0.49 2 45476690 45479422

Neighbor

gene id symbol gene type direction distance location
LOC110523755 NA coding downstream 61899 45325909 ~ 45414664 (-)
parvaa LOC106573218 coding downstream 154892 45304638 ~ 45321671 (-)
LOC110523724 LOC106573217 coding downstream 176692 45257236 ~ 45299871 (-)
LOC110523718 LOC106573216 coding downstream 220514 45250014 ~ 45256049 (-)
LOC110523666 LOC106573213 coding downstream 334248 45115903 ~ 45142315 (-)
LOC110523892 LOC106573278 coding upstream 152749 45632171 ~ 45680658 (-)
LOC110523903 LOC106573225 coding upstream 250813 45730235 ~ 45867098 (-)
LOC110523913 LOC106573227 coding upstream 508524 45987946 ~ 46025205 (-)
LOC110523921 LOC106573228 coding upstream 546356 46025778 ~ 46076741 (-)
tcp11l1 tcp11l1 coding upstream 606160 46085582 ~ 46097107 (-)
G49459 LOC108441480 non-coding downstream 24832 45435672 ~ 45451731 (-)
G49560 NA non-coding downstream 94425 45360643 ~ 45382138 (-)
G49556 NA non-coding downstream 117012 45339225 ~ 45359551 (-)
G49555 NA non-coding downstream 137413 45338855 ~ 45339150 (-)
G49456 NA non-coding downstream 151991 45323205 ~ 45324572 (-)
G49759 NA non-coding upstream 219734 45699156 ~ 45699878 (-)
G49777 NA non-coding upstream 244737 45724159 ~ 45724388 (-)
G49817 NA non-coding upstream 312730 45792152 ~ 45793197 (-)
G49872 NA non-coding upstream 400369 45879791 ~ 45880234 (-)
G49907 NA non-coding upstream 401648 45881070 ~ 45939772 (-)
tspan9a LOC106573177 other downstream 2347534 42852829 ~ 43129052 (-)
G41868 NA other downstream 6454538 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7284827 38187488 ~ 38191736 (-)
G40732 NA other downstream 7350838 38125280 ~ 38125725 (-)
G40079 NA other downstream 7759530 37716540 ~ 37717033 (-)
G49774 NA other upstream 241383 45720805 ~ 45721124 (-)
G49962 NA other upstream 469536 45948958 ~ 45949951 (-)
G51214 NA other upstream 1585352 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1809517 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 1898219 47377641 ~ 47378543 (-)

Expression


Co-expression Network