G49221


Basic Information

Item Value
gene id G49221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45569884 ~ 45570473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55003
cagatatgcatatgttggtcacagatacagtcgggcaaaaatgtatggaacatgctgtcgtacacgttgatccactgcatcccaaacgtgctcaatgggtgacatgtctggtgagtatgcaggccatggaagaactggaaaatgttcagcttccaggaattgtgtacagatccttgcaacaacAGGCTGTGCATTATCTTGCTGAAACATGAGGATGGAGGCAGATTAATTGCACAACAGtggacctcaggatctcatcacggtatctctgtgcattcaatttgccatcaataaaatgtgattgtgttcgttgtctgtagcttatgcctgcccataccataatcccaccgccac

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55003 True 354 lncRNA 0.39 2 45569884 45570473

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 98371 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 115057 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 123471 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 454536 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 497451 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 571533 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 679246 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 899023 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 928537 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 933341 46503814 ~ 46505112 (+)
G49183 ppfibp2 non-coding upstream 54810 45504789 ~ 45515074 (+)
G49146 NA non-coding upstream 145091 45424592 ~ 45424793 (+)
G49103 NA non-coding upstream 217576 45350934 ~ 45352308 (+)
G49102 NA non-coding upstream 221225 45346523 ~ 45348659 (+)
G49095 NA non-coding upstream 242504 45327105 ~ 45327380 (+)
G49288 NA non-coding downstream 83924 45654397 ~ 45703120 (+)
G49335 LOC106573225 non-coding downstream 159768 45730241 ~ 45736780 (+)
G49977 NA non-coding downstream 394744 45965217 ~ 45965531 (+)
G49999 NA non-coding downstream 407793 45978266 ~ 45978498 (+)
G50008 NA non-coding downstream 417501 45987974 ~ 45990418 (+)
G49142 NA other upstream 151704 45414706 ~ 45418180 (+)
G48976 NA other upstream 423244 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 778794 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 821879 44720664 ~ 44748569 (+)
G50010 LOC106573227 other downstream 421800 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1287435 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1656773 47227246 ~ 47260224 (+)
G52080 NA other downstream 2436201 48006674 ~ 48024958 (+)

Expression


Co-expression Network