G49288


Basic Information

Item Value
gene id G49288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45654397 ~ 45703120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55071
CTACAGCATGAGaaagttgtccggctgcggggactgtgccaggggatttatactactatctgtacttactggtggcacagacgcggtttcatcctttcctacactgaaattacccttgcctagcgattgcgtctgaagctgggcttgtagcacagctatcctcgccgtaaggcgagtacagcgactgcaattagaaggcatcatgttaatgttactacttagctt
>TU55070
tgactgtttcatcctaacatcgttggtgccgacgtggataacaatatctctatactctctacactcgccagttttagctttagccagcaccatcttcagattagccttaacgtcggtagccctgccccctggtaaacagtgtatgatcgctggataattcgttttaagtctaatactgcgggtaatggagtcgccaatgactagtgttttcaatttgtcagagctaatggtgggaagcttcgacttggcctctgactccgacccgctgcttaatggggaaaaccggttgaaagtttctgtcggctgaatgagcgacaccggttgagcgttcctacagcatttccttccagaaaccgtgagaaagttgtccggctgcggggactgtgccaggggatttatactactatctgtacttactggtggcacagacgcggtttcatcctttcctacactgaaattacccttgcctagcgattgcgtctgaagctgggcttgtagcacagctatcctcgccgtaaggcgagtacagcgactgcaattagaaggcatcatgttaatgttactacttagctt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55071 False 225 lncRNA 0.49 2 45654397 45703120
TU55070 True 573 lncRNA 0.48 2 45702506 45703120

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 182884 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 199570 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 207984 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 539049 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 581964 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 438886 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 546599 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 766376 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 795890 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 800694 46503814 ~ 46505112 (+)
G49221 NA non-coding upstream 83924 45569884 ~ 45570473 (+)
G49183 ppfibp2 non-coding upstream 139323 45504789 ~ 45515074 (+)
G49146 NA non-coding upstream 229604 45424592 ~ 45424793 (+)
G49103 NA non-coding upstream 302089 45350934 ~ 45352308 (+)
G49102 NA non-coding upstream 305738 45346523 ~ 45348659 (+)
G49335 LOC106573225 non-coding downstream 27121 45730241 ~ 45736780 (+)
G49977 NA non-coding downstream 262097 45965217 ~ 45965531 (+)
G49999 NA non-coding downstream 275146 45978266 ~ 45978498 (+)
G50008 NA non-coding downstream 284854 45987974 ~ 45990418 (+)
G50009 NA non-coding downstream 287942 45991062 ~ 45991429 (+)
G49142 NA other upstream 236217 45414706 ~ 45418180 (+)
G48976 NA other upstream 507757 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 863307 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 906392 44720664 ~ 44748569 (+)
G50010 LOC106573227 other downstream 289153 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1154788 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1524126 47227246 ~ 47260224 (+)
G52080 NA other downstream 2303554 48006674 ~ 48024958 (+)

Expression


Co-expression Network