G49335 (LOC106573225)


Basic Information

Item Value
gene id G49335
gene name LOC106573225
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45730241 ~ 45736780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55119
CTCACATGTACTTTTATTGTAAAGGTTATTTATTCCAAAATATGGTGTGATATGGTGTAGAggcaaaaaaagaaagagagaggacagaaaaaAACAAGAGAGCGAGAACATCTAAAAATGAGTTTGGCAAGACTTGGCTGACATTTTTATCAAAATACACAACAAAAATAACACAATATCTAATGATGCACACAATCGCTGCCCTCTCAATGAGGCATCTCTATGTTTAAGCCTCTACATGTATTACAATGGAATAAAAAGTCACTACAGATTCTTGTCTTGAAAAGAATAATCTATTTGAGGCATACAAAAACCTGGAATGATTGTTCACCTGTGCTTTGTTTTGGAATACAATTGTCAAATTAACAAACTAACCACAGGAtacaatattttttataaattactTGGTTGGTATTTTCATTTAATAACGTTTCATTACAATCAACACTTATTTTCGAAAAAGTCACTGTGTATACAGGGCTACTTTGTACAAACTGTATGGAGTATTGTGGTTCATACAACAGGGTTATTATGCCCAAATCAACAGGGCAGTGATGTTTGGAGACCTGCCTTAATGATACAGGAATGCTGGAGTGACCCGGATAAAAACATTTGGGGCAGGAAGAAAATGCCAAAAGCTAATTCCTTGTGACGCCCTAGGCTAGAGGCCTGGGCTAATGCGACTCTAAGATTTGCAACTGCCCTTTTAAACATGGTGATCATCATAATCTGGCCACAGTTTGAAGTCTTCTGACTGAGAATCGTTAGACATGCAAGAGTGAAAGTGTGTCATCACTGCTAGCTAGTGAAGCCAATACAACGGTAGTATAAAGACAAAAATAACATTGTAAAAAAACGTGTTGTATTGTGTGTGGTTGTGAAGTTGTGGTGTAATGTATAGTGTTGGTTACATAGTAATACATAGGCCTGCTGAGTGATGAGGCTACTAGAAGACTAATGACTGACGCTGGTCTCGTCCTCAGCCCAGTGATCCACTAAATGCTTACAGTAATGGCATCTCTGGAGAATCTCTTATCTCCATCCAATACACAGGTGGACTGTCTCCACCACACCGACTGCCAACCTTGGCTAAATCAACACTGACTAAGTCTgcttctccttcctccccccaacCCTAACAGAGTGCATCGTATAGtatcacagagaaacacagataaACAGCAGCGCCCCCTAGCAGGGATGGACTTTACAGGCGCGGATCTCCTTCCTGTCCTTGCAGCTGGTGACCTGTGCCGGGGTGTTCTTAGCTCTCTTCTTCACCGTCATGAAGCGCTCCTGGATCCCCCCGCCGCAGTGTTTGGTACAGTCTGTCCAACTGGACCAGGGCCTCATCT
>TU55125
CTGGTGTCTGACTTCCACTATGTCTGTCTGTGAGCCTAAGTCTCAACACCTTTTTGGCAACACACAGGCTATTGCTATGCAAAACAAACCATTGGAGTCAGCTATACAATCTGGGACTAGGCTATGACAGtgctaaaacaaacaaacatatgaATTTGAAATATTATGCACAAAGTTGGGCACTAGTTTCTAGTGGTCACACTCTGTTTTGGCGTTGATGGTAGTGGTAAACAGCATGGCAACATCTGATGGTGACACTTACGACACTCCGGCTGCATACACCGCTCCACCTGTTCCAGCTCCTCAGTACACTCCCCCAAGTCTGGAGACTTGAGCATGCGCTGGCGTGTACGCACTCCCTTCCCGCATGTCACACTGCAGTCGCTCCAGTCGGACCACGGAGACAGCATACACGGAATAGAGTGGCACTCAGGCATCATGCATTTCTCCACCTCTGCCACCTCCACTTTGCACATGGAACCATCCGAGGGGGGCATCTTCACCATGCGCTCACGTTGCTTCATGCCCAGCCCACAGGTGGTGCTGCAGGGATCCCACTCACCCCACTCCGTCACCACACAGCTACTGAGGGCTAATGGAAGGGACAGGGACAGATACACGCCCATACAATGGGATGGTTCTTTGTTATGGCGGCTTGCGATTACTGTTTTTAACATTACTTGAGAAACTTGGTTTCATTAACACACTGACTGAATAAGCCTGTTGGCATTTAGCAGCAGGGCTAAGGAAGTATACTTCAAAAGAACAGAAAGGCCCGCACACTGAATATGCTCGCAATTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55119 False 1355 lncRNA 0.41 2 45730241 45731622
TU55125 True 802 TUCP 0.50 2 45735053 45736780

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 258728 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 275414 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 283828 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 614893 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 657808 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 410384 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 518097 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 737874 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 767388 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 772192 46503814 ~ 46505112 (+)
G49288 NA non-coding upstream 27121 45654397 ~ 45703120 (+)
G49221 NA non-coding upstream 159768 45569884 ~ 45570473 (+)
G49183 ppfibp2 non-coding upstream 215167 45504789 ~ 45515074 (+)
G49146 NA non-coding upstream 305448 45424592 ~ 45424793 (+)
G49103 NA non-coding upstream 377933 45350934 ~ 45352308 (+)
G49977 NA non-coding downstream 233595 45965217 ~ 45965531 (+)
G49999 NA non-coding downstream 246644 45978266 ~ 45978498 (+)
G50008 NA non-coding downstream 256352 45987974 ~ 45990418 (+)
G50009 NA non-coding downstream 259440 45991062 ~ 45991429 (+)
G50011 LOC106573227 non-coding downstream 262330 45993952 ~ 45994217 (+)
G49142 NA other upstream 312061 45414706 ~ 45418180 (+)
G48976 NA other upstream 583601 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 939151 44789630 ~ 44791090 (+)
e2f4 LOC106573204 other upstream 982236 44720664 ~ 44748569 (+)
G49335 LOC106573225 other downstream 3431 45730241 ~ 45736780 (+)
G50010 LOC106573227 other downstream 260651 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 1126286 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1495624 47227246 ~ 47260224 (+)
G52080 NA other downstream 2275052 48006674 ~ 48024958 (+)
G52324 NA other downstream 2643762 48380542 ~ 48383257 (+)

Expression


Co-expression Network