G49977


Basic Information

Item Value
gene id G49977
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45965217 ~ 45965531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55816
TTTTAAGATAGAGCTAATTTAATTGCCTTATTGGTTTCCACGATGGGAACCTACTGGGTTGTGAGAAGTTACTCAGAGCAGGGTTAAAATTTTGCATTACTACAAAACACATACAACGCTGCTTATTCTCAAAgcactctatctctctcatctAATAATTTCACTGAAAAGCTCCCATTGACTCTAGAATTACGAGAAGCACTTATTTGGAAAGTGACCACAATTCCTCCATAGAAAGTTACCTTTTCAATTTTTTGGGGGAAAGGTCCTTGAAATGTTTGTAATTAATACTTTGGAGAAATGTATTGATTTAGC

Function

NR:

description
PREDICTED: transcription factor-like 5 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55816 True 315 lncRNA 0.35 1 45965217 45965531

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 493704 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 510390 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 518804 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 849869 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 892784 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 176475 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 284188 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 503965 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 533479 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 538283 46503814 ~ 46505112 (+)
G49335 LOC106573225 non-coding upstream 233595 45730241 ~ 45736780 (+)
G49288 NA non-coding upstream 262097 45654397 ~ 45703120 (+)
G49221 NA non-coding upstream 394744 45569884 ~ 45570473 (+)
G49183 ppfibp2 non-coding upstream 450143 45504789 ~ 45515074 (+)
G49146 NA non-coding upstream 540424 45424592 ~ 45424793 (+)
G49999 NA non-coding downstream 12735 45978266 ~ 45978498 (+)
G50008 NA non-coding downstream 22443 45987974 ~ 45990418 (+)
G50009 NA non-coding downstream 25531 45991062 ~ 45991429 (+)
G50011 LOC106573227 non-coding downstream 28421 45993952 ~ 45994217 (+)
G50012 NA non-coding downstream 28828 45994359 ~ 45994892 (+)
G49142 NA other upstream 547037 45414706 ~ 45418180 (+)
G48976 NA other upstream 818577 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 1174127 44789630 ~ 44791090 (+)
G50010 LOC106573227 other downstream 26742 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 892377 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1261715 47227246 ~ 47260224 (+)
G52080 NA other downstream 2041143 48006674 ~ 48024958 (+)
G52324 NA other downstream 2415011 48380542 ~ 48383257 (+)

Expression


Co-expression Network