G50001 (LOC106674859)


Basic Information

Item Value
gene id G50001
gene name LOC106674859
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45979652 ~ 45980496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55841
GTTCAGCGGGTACAGAAATGTCTCCGATTCCAGATACATCTTCGATCTTACTTACACAGTCGTCCAGCAGGGGAAAGTTTGCGAAGTTATTGTTCTCTGTTCGTCGTTTCCATAACGGTAGCTTTTTTTGAAAAGCCTTCAGGTTTTCCTCCGCTTCGATGATGTTGACTCCACCGCCCTACATCTTTTGATTGAGATGATTGAGAGCTGCGAAGATATCGGCCATGTACGCTAAAATGAGAATGAACTCAGAATTTTTGAAGCAATCTGCATGACAATGTTGGTGCTCTTGCAAAAACAGGGCTAATTCCACACGCACGGCAAAAACACGATTCAGCACCTGTCCCCGGGATAACCACCTAACGTTAGAATGGTACAGAAGTACCTCGAATTCAGAGCCcatttctttacacagctcactgaagaTGCGATGCCGCAGAGCACTAGTTCGCACATAGTTCACGCATTCCACTACAATTTTTAATACTTCTGCCAGTTTTGGAGGCAAGGTTTTTGTTGCCAACGcatgcctgtgcagaatacaatgcgtaacaatgatgtgtggtgcatcggctttcactagcgcaccaaaaccagactttcttcccagcatgactggagctccgtccgaacaaactgcagaaaccatatcccacgaaagattgttgtctttgaagaagtcatccacaagtttcttcacatcggctgccttagttgttgttgtaagaggcttacaaaataaaaattattcctttatcacgtcgtctttcacatagcgcacgaatacagcaagctggcttagattggaaacgtctgtggtctcgtcgagttgaaggctgaatttt

Function

NR:

description
protein ZBED8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55841 True 845 lncRNA 0.44 1 45979652 45980496

Neighbor

gene id symbol gene type direction distance location
LOC110523903 LOC106573225 coding downstream 112554 45730235 ~ 45867098 (-)
LOC110523892 LOC106573278 coding downstream 298994 45632171 ~ 45680658 (-)
LOC110523834 LOC106573224 coding downstream 392571 45476653 ~ 45587081 (-)
LOC118964648 NA coding downstream 501811 45476653 ~ 45477841 (-)
LOC110523755 NA coding downstream 564988 45325909 ~ 45414664 (-)
LOC110523913 LOC106573227 coding upstream 7450 45987946 ~ 46025205 (-)
LOC110523921 LOC106573228 coding upstream 45282 46025778 ~ 46076741 (-)
tcp11l1 tcp11l1 coding upstream 105086 46085582 ~ 46097107 (-)
LOC110524015 LOC106573241 coding upstream 756939 46737435 ~ 46743033 (-)
LOC110524028 LOC106561496 coding upstream 836560 46817056 ~ 46839553 (-)
G49997 NA non-coding downstream 2278 45977125 ~ 45977374 (-)
G49978 NA non-coding downstream 14386 45965058 ~ 45965266 (-)
G49907 NA non-coding downstream 39880 45881070 ~ 45939772 (-)
G49931 NA non-coding downstream 58207 45909035 ~ 45921445 (-)
G49872 NA non-coding downstream 99418 45879791 ~ 45880234 (-)
G50230 NA non-coding upstream 24803 46005299 ~ 46005507 (-)
G50233 NA non-coding upstream 35164 46015660 ~ 46015867 (-)
G50234 NA non-coding upstream 35576 46016072 ~ 46017322 (-)
G50262 NA non-coding upstream 130158 46110654 ~ 46110971 (-)
G50282 wt1 non-coding upstream 176229 46156725 ~ 46159520 (-)
G49962 NA other downstream 29701 45948958 ~ 45949951 (-)
G49774 NA other downstream 258528 45720805 ~ 45721124 (-)
tspan9a LOC106573177 other downstream 2850623 42852829 ~ 43129052 (-)
G41868 NA other downstream 6957627 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 7787916 38187488 ~ 38191736 (-)
G51214 NA other upstream 1084278 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 1308443 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 1397145 47377641 ~ 47378543 (-)
LOC110524104 LOC106573248 other upstream 1561880 47541224 ~ 47561223 (-)
LOC110524264 LOC106573263 other upstream 2313612 48291626 ~ 48304829 (-)

Expression


Co-expression Network