G50008


Basic Information

Item Value
gene id G50008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45987974 ~ 45990418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55848
TATTCCACCCAAATTCTGCATAACTACATCCAACTGCATTCTGTATGACATGATTCAAACTCCTGTGCCTTCAGAAGCCTCAGGGGCCTGTCGTCACATTCCACCTCAGAAACGTGTCGGATGAAAGATGCATCAGCAGTGCATCGACTTGTGTCAACTCATTTGTCCTGTTCCTTTTGACTGTTTTTAATCAATCATATTTTCCATTCATTAGCTTGAAATATGGGTGAACATACCAATGATATTATTTGAAACAAACTGGAGTACCTTTTGTCTTTTTAGCGATACaagtgataatgatgatgattccaagcaccaaccAAATGGTTTGTGCTCGACAAAGGCCAAGATGTTAAATGTATAAGCTACATTATGATTCCTTTTCAAGTCTCATCCACATTGTTGAGTGAAACTTTTTATTGTGAGTCAAATCTGGTAgaggaatttttttttttacaaatgtatgaGTAGAGGTGAAAAGGAAGGTAGTGTTACAGAGCACATCATATAGATTCTCAAAAAGGTATTTGCGTTTCAGCTTTTTAAAATGTCATCATATTTCCTGTGGAATATTCGGCATACATTTTTGGAACTACATCTCCCAAAAATAATTGATTCATCATTTTGTAGAAAAATAGTCAAATCACATTTGTCAAACTGGGTAGCAACAGTTGAGATCCATTTAAAGACACCTACCCAGTCAAACGAATGGACTAGATAATGACTTTGCATTTGCGTCATTATCATTGAGTATAGCTCAAAAAATTTgtaaaatcaaaaaaaaaaagaaatctaaTATTTCAAATATGAATATTGCATGCTTAACAAAGTCTTCACATTGATACTGCAGTTTTGTAGAGCCAGGTAATCTAAGAAAGTGCTATGTTCATCTAATCCATACTAAACTAATGTCGTACCTACATTGTGATAGACCAAACTGTATTTTCTATTTCCAATTATATCACATTGATTAGACCTTATTCTGTTACTATTTCGAAAGTGTGAAAGCTTTTCCAACGCTATGTCATTATCAGATATGCAATGTCAGCGCAGTAATACACATCGCCCAatctggtaacatgttttggtGGCTGTTGATCTACACCTAACTGTACTGATGAACTGAACTAGTAGCATGTACAGTACATGGTAAAGGGCCCTAGCCGTCATGTTTTCCTTGTTTTGAGATCCTGAAAACTCAGTAAATACTAGTAAAACATAGAATTATCCATCATTTTGCTTATGTTATGACCGAGTGAGTAATTTTGCATATACCAGCATATGCACCGACATGAATACATTCGAAATGTGCTATTTGTTTTACACTATGTGATCCTGTGTTGGTACCCTTTGACAAATTAGAAAATAGGATTGAAAGCAATCTGACCATCCTTCAAATTAAAAAATGCAGTAAAGCAAGTCAACTTCTAAAGAAAATGGTGTCAAAATATACAAGcaaatctctcgctctctctctctgtctctcacggcTGGCACAAGTCTCTTCAATAATTAATGTCTTCACGTTACATCATATATTTAATCAACACACCTGTGGCCCATCCGACACCCATCTTCCTATACTACTCTGTCCAGTGAAAAGGATAGGACCCAATATAAGTCAAAATCTCCAAATACAAAACCGTAACACGTGAAGAACTATTGTAAGATCATTTGTGTGCGGCAATATACGACTCTATTCATCTTTTCATAATCGTGGTCAGTAGACAAACTTCATAAGCATATGAATAACAGAACAGGTGAccgttgtttttttttgtgtttttttactGTAATCTGATTGGGTAAAGGTCATGAGTACATTTGaaaaatacagaatgacatagCCACTCACACTAAAGCCTTTCTTCGCAcggttttttcttcttttttttctcttttgccTTTTAATAAGGTGAGCGCACAACAGACACTCACTCAATTATTTCCCCCTTTTAAAAAGAAGTAAAGCATGAAAGTAAACGACAAAGCACACGAATATCCAACAACTGAAACTGAGAGACTaagttagtttttttttttaaaatacacACAAACCACCAGTAGTAGGTACAAGTCTTCTGTCCATTAAGGAATTTGGAGAATCAAAAAGCACAGTTAGTTAGTCCAGCTTTGCCATCCCTGTCGTTGGATGGTGTGGACCAGGGTAGAGGTTGTATGTGGCACTACCATGGGGGATAGGGCTGCTGTACTCTAGTCTAGGCCATCCTCTGCTGGCTGATGGCAGTTGACATGGAGGCTGTGAGGTCTGGGAGACCTGGGGctcagagagcagagcagagagggcaTGGCTGGGCTGAGGAGGCAGGCCAGAGGCCAGTAGCCAGGGGCCAGTAACCAGGGCCAGGGGAGAAGGGCAGGGCAGGGTGCTCGAGTCCAGGGGTACTCAATGTGAGGGAGGGAGGCCCTACTGCCTAACCAAAA

Function

NR:

description
PREDICTED: neurexin-1-beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55848 True 2445 lncRNA 0.39 1 45987974 45990418

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 516461 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 533147 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 541561 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 872626 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 915541 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 151588 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 259301 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 479078 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 508592 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 513396 46503814 ~ 46505112 (+)
G49999 NA non-coding upstream 9476 45978266 ~ 45978498 (+)
G49977 NA non-coding upstream 22443 45965217 ~ 45965531 (+)
G49335 LOC106573225 non-coding upstream 256352 45730241 ~ 45736780 (+)
G49288 NA non-coding upstream 284854 45654397 ~ 45703120 (+)
G49221 NA non-coding upstream 417501 45569884 ~ 45570473 (+)
G50009 NA non-coding downstream 644 45991062 ~ 45991429 (+)
G50011 LOC106573227 non-coding downstream 3534 45993952 ~ 45994217 (+)
G50012 NA non-coding downstream 3941 45994359 ~ 45994892 (+)
G50013 NA non-coding downstream 4650 45995068 ~ 45995681 (+)
G50014 NA non-coding downstream 5932 45996350 ~ 45997699 (+)
G49142 NA other upstream 569794 45414706 ~ 45418180 (+)
G48976 NA other upstream 841334 45145278 ~ 45146640 (+)
G47910 LOC106573211 other upstream 1196884 44789630 ~ 44791090 (+)
G50010 LOC106573227 other downstream 1855 45992273 ~ 45992891 (+)
LOC110524042 NA other downstream 867490 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1236828 47227246 ~ 47260224 (+)
G52080 NA other downstream 2016256 48006674 ~ 48024958 (+)
G52324 NA other downstream 2390124 48380542 ~ 48383257 (+)

Expression


Co-expression Network