G50011 (LOC106573227)


Basic Information

Item Value
gene id G50011
gene name LOC106573227
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45993952 ~ 45994217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55854
CTGATGTGGCATCCTGCATAGGAGGCCCTCTTCTCCTCAGCAGTCATTGGCTCCTTTGCCATCTCAGGCCTACTGTGCCTCTCTCTGGGGTTGTATGGGTGGATGCCATTGTCTGTGATGGGGAAATCACAGTAGCCTTTTCTCTTGGCTTTCTGGCGGACTTTGTTCCTGTAGTGTTCGATGTCGGTTTTCTGCTTGAGCCCCATGTTTGCCTGTGGACAAAGTCATTTGTATCCATTACATTTGTATATTGATTCTAGTTTGGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55854 True 266 lncRNA 0.48 1 45993952 45994217

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 522439 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 539125 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 547539 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 878604 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 921519 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 147789 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 255502 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 475279 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 504793 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 509597 46503814 ~ 46505112 (+)
G50009 NA non-coding upstream 2523 45991062 ~ 45991429 (+)
G50008 NA non-coding upstream 3534 45987974 ~ 45990418 (+)
G49999 NA non-coding upstream 15454 45978266 ~ 45978498 (+)
G49977 NA non-coding upstream 28421 45965217 ~ 45965531 (+)
G49335 LOC106573225 non-coding upstream 262330 45730241 ~ 45736780 (+)
G50012 NA non-coding downstream 142 45994359 ~ 45994892 (+)
G50013 NA non-coding downstream 851 45995068 ~ 45995681 (+)
G50014 NA non-coding downstream 2133 45996350 ~ 45997699 (+)
G50015 NA non-coding downstream 5357 45999574 ~ 46000629 (+)
G50016 NA non-coding downstream 6751 46000968 ~ 46001791 (+)
G50010 LOC106573227 other upstream 1061 45992273 ~ 45992891 (+)
G49142 NA other upstream 575772 45414706 ~ 45418180 (+)
G48976 NA other upstream 847312 45145278 ~ 45146640 (+)
LOC110524042 NA other downstream 863691 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1233029 47227246 ~ 47260224 (+)
G52080 NA other downstream 2012457 48006674 ~ 48024958 (+)
G52324 NA other downstream 2386325 48380542 ~ 48383257 (+)
G53181 NA other downstream 2899280 48893497 ~ 48893912 (+)

Expression


Co-expression Network