G50012


Basic Information

Item Value
gene id G50012
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45994359 ~ 45994892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55855
CCCACCTCTACACTGCCTGTTCCGTACCTATCCAGAACTATCTTCAGATCTGCGTATAAAGGGTTGGGGctaaggggaaggggaagggagcaATTTGGGACAGGCTGGCCGACTAAGTATGACATCATTCCCAGCAGGCCGGGGACGGGCTCTCACCTCCCCATTGAGGACGACAGAGTCCTGGCTGTGACTGGAGGAGGATGGGTAGGAGTATGTGGGCTGGGCTGCCATTGGCTTGATGGTGATGAGTCGCAGTGAGCCGGTGTGGTCCTCGTAGGGATCTGCTGGGGTGAGAGGACATTGCTATTTAGCACAGCACTAGCTAGCCCAGCTACTACTGATCCTGCTGTTATCCCCACTCACACTGCCTGAGTTACTGCAGTAAGACATGCGGTGTGTGcacgtgcgcgcgtgtgtgcgcgcgtgtgtgcgtgtgtgcttgtgtgcatgtgtgcttgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55855 True 534 lncRNA 0.56 1 45994359 45994892

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 522846 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 539532 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 547946 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 879011 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 921926 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 147114 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 254827 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 474604 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 504118 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 508922 46503814 ~ 46505112 (+)
G50011 LOC106573227 non-coding upstream 142 45993952 ~ 45994217 (+)
G50009 NA non-coding upstream 2930 45991062 ~ 45991429 (+)
G50008 NA non-coding upstream 3941 45987974 ~ 45990418 (+)
G49999 NA non-coding upstream 15861 45978266 ~ 45978498 (+)
G49977 NA non-coding upstream 28828 45965217 ~ 45965531 (+)
G50013 NA non-coding downstream 176 45995068 ~ 45995681 (+)
G50014 NA non-coding downstream 1458 45996350 ~ 45997699 (+)
G50015 NA non-coding downstream 4682 45999574 ~ 46000629 (+)
G50016 NA non-coding downstream 6076 46000968 ~ 46001791 (+)
G50020 NA non-coding downstream 11384 46006276 ~ 46006712 (+)
G50010 LOC106573227 other upstream 1468 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 257579 45730241 ~ 45736780 (+)
G49142 NA other upstream 576179 45414706 ~ 45418180 (+)
G48976 NA other upstream 847719 45145278 ~ 45146640 (+)
LOC110524042 NA other downstream 863016 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1232354 47227246 ~ 47260224 (+)
G52080 NA other downstream 2011782 48006674 ~ 48024958 (+)
G52324 NA other downstream 2385650 48380542 ~ 48383257 (+)
G53181 NA other downstream 2898605 48893497 ~ 48893912 (+)

Expression


Co-expression Network