G50016


Basic Information

Item Value
gene id G50016
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46000968 ~ 46001791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55859
TGGACAGTGTAGCTCCCGACGGTGGTGGCCCTTCTAAAGCGGCTCCCCTGACTCCCCTGACGCCCAGACACCAAAAAAAGCTCAGCCAGCCGCTGCTCCATTAAACTAGCAAAGCTCTGATAATTCCCTTCCAGAGAAGAGCTGTCAACATCCTGAATTACTGCAGAGCagtggagcacagagagagagagagagagagagagagagagagagagagagagagaggtggagacggggagggggatgtgaggggggagagaggtggagagagggggagggggaagtgaggggagaggggggagagagaggtaagaggaaaagagagggatagagaggtaaTGGAGAGGTGGGATAGGgacagaggaggaaagagaggtttGGTCATTCCTCAATTTAAAACTTGTAAGTCATATTATAGTAGGGCTGACCTGGGCGCACTGCAGTCTCATCACGACAGTGGCAGAAAGGTGTGCCATTTAGAGTCCTCTCACAAAACAGGGCCTCCTTCACACCGAGCATTTATCCGATGTGATCTCACAGAAACAGATGTCAGGAAGCTCTAAATAATGCATCAATAGGATtcgggagggaaaggaggagctCAAAGATGTTGGGAGAAGAAACACCACAGGCAAATGTACACAACACACAGTCGACCAAAGCACTAACTAACTAGCAGTTAGTGAAAATCAATGACAGTTTAAATTACCTGTGATCACCCAGTAGTGCTTTGTGGCAGTGGatgtgttgaggttgtggtactctagtgctgtggagtgaaagggagagagaaagagagagggagagcagagatgagagagagg

Function

NR:

description
PREDICTED: UPF0606 protein KIAA1549L isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55859 True 824 lncRNA 0.50 1 46000968 46001791

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 529455 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 546141 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 554555 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 885620 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 928535 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 140215 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 247928 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 467705 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 497219 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 502023 46503814 ~ 46505112 (+)
G50015 NA non-coding upstream 339 45999574 ~ 46000629 (+)
G50014 NA non-coding upstream 3269 45996350 ~ 45997699 (+)
G50013 NA non-coding upstream 5287 45995068 ~ 45995681 (+)
G50012 NA non-coding upstream 6076 45994359 ~ 45994892 (+)
G50011 LOC106573227 non-coding upstream 6751 45993952 ~ 45994217 (+)
G50020 NA non-coding downstream 4485 46006276 ~ 46006712 (+)
G50021 LOC106573227 non-coding downstream 5259 46007050 ~ 46007332 (+)
G50022 NA non-coding downstream 6180 46007971 ~ 46008537 (+)
G50024 LOC106573227 non-coding downstream 7998 46009789 ~ 46010091 (+)
G50026 NA non-coding downstream 10691 46012482 ~ 46012849 (+)
G50010 LOC106573227 other upstream 8077 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 264188 45730241 ~ 45736780 (+)
G49142 NA other upstream 582788 45414706 ~ 45418180 (+)
G48976 NA other upstream 854328 45145278 ~ 45146640 (+)
LOC110524042 NA other downstream 856117 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1225455 47227246 ~ 47260224 (+)
G52080 NA other downstream 2004883 48006674 ~ 48024958 (+)
G52324 NA other downstream 2378751 48380542 ~ 48383257 (+)
G53181 NA other downstream 2891706 48893497 ~ 48893912 (+)

Expression


Co-expression Network