G50036


Basic Information

Item Value
gene id G50036
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46025782 ~ 46027776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU55883
tttttattcaaagtGAATCTTGACAATAGTACACCAATTCTTAATTTGACACTCGCCAATATTCACCAGGAAAACCCGCTTTTTATGACAAAGTACATAATGCTTGGTCACATTGAAATCACTGAGAACTAGAGAGAAATACGACCGCAAACTGTAAAAGACATTACATCCAAAATAATAAATTGTCCCAGTcctcataatatatatatatatattgcacaGTGCATTTGCTACATGGCAAACTAGTGTAGCATAAAATCAAAAGCAAACAAAATCATAAAGCCACAAAAACTACACATTAAACCAGTAACAGGTGAAATTACTGCAAAAAAAGATCCAAAGCAATCAAACAAAGTGGTAAGGATTGGAAGgttaatacagtagaatacaaaaGACCCTGAATGAATCATATAGGAAGTCATAAAACAATACAATTGCAGTATATGTGACAACTTTGGACCTAATATTTACGTGGGATGTTAAAGCAAATACCAACAAGTGATACATCAAAACTAAGGCTGCTATATGGATGTTGATCATATACACAGAACAGAATTCTCTGTAGCCAATCGAAAACTAAAACAAAACTATTTTGTCAAGTCCGCAAACCATATGTTCAACTCCACATATACATTCACATTGTATGTAAAGCTTTGCATTTGTGCATGTCCAATAAGAGATAAACTGTGTCTTGGGTGAAGAGTGTAAAAAAATATTCCCTGACTAAGAataacatttgtatttttatattCTGTAGAAAAGCTTTATGGATTCAGACCATATGGTCTAAGGTTGCGCATTGGGGTTGAGTGATCTGAAGATAGAAGCCAGCACCCATAAGAGCTTCTCAAGAGAGAAGAATGCATTGGATTTGTCAGCTCTATTACACTGTACACGAGTCCAGAAGCAGAATGCTTTCTCACTGATGGCAAACATGTAAAACATATTTGGAGACAGGCTGCAGAAGTCCTGAAATAACAAGAGGCTGCTTAATCCTAACATCCTGCCGCTTGGATGTGTAATACTCTATTCTGTTGAGGAGCGTCCACATCTGACTCTACTGCCACCCCTCTGCGGGAGAGGGGACTGCCTAGGGGTCAGGGAGTTATCGACAAACAGTTATTCTCTGGACCACATATCTAAAAAGGCACTAGGTTGGTTATAGACAGTCAGAATGACAAAAAAATGCATCCGTGTGTGTCCGGGGTTGTGGGGCTAGTGAGTAAACAAATTTAAACAAATCTCTCAGTCCACAATGTAATGAAACTACAAAAGGAGTGGCAAGATTTGAAAGCGAAAAAGATCAGTCATCATTTGACAATCCCCCTTGTTTGGATTAAAGATTGAAGAAAAATCCCACACATTTGCCTCAGTCAATCAACTAGGAATAGGTCAGAATAATCTGTAGAAGATCCCTCTCAATCCACTTTAGATACAAAAAGTGGGTTTAGAACATTTTCTTAGGCTTAAAATAAATGCCTAAAAAAGAAATCATATAGTCAAAGTCCACAGAGCACAGCAATTTCATGAAAACTGTGTGGGATTTTACCTTATACTGAACCTGATGAGCATATTGAGAGTTCAATAAATTTGAACAAGTGCTTACTGATCCATTTCATAACAAATAGTACGTATGTGAAGAAGGCCTCTCTGTAGCCCAATGTTTAGATAAGGACCAAATAGATGTGTTGCAGTAAATATATCTGCATGGTAATACAGATCTGTCAATCAATGGTAATGCGAGTAAGATGTAGGCTTTTGAGCGTGTTAACAGAACAATAACTAAAAATCAACACAAAATTGTCAACACATCAATTACTGTATGCAATGATGAACCCAACCTATATTTAATAAGATAAAAATACTGATGCTATAGGC
>TU55884
tttttattcaaagtGAATCTTGACAATAGTACACCAATTCTTAATTTGACACTCGCCAATATTCACCAGGAAAACCCGCTTTTTATGACAAAGTACATAATGCTTGGTCACATTGAAATCACTGAGAACTAGAGAGAAATACGACCGCAAACTGTAAAAGACATTACATCCAAAATAATAAATTGTCCCAGTcctcataagcacaGTGCATTTGCTACATGGCAAACTAGTGTAGCATAAAATCAAAAGCAAACAAAATCATAAAGCCACAAAAACTACACATTAAACCAGTAACAGGTGAAATTACTGCAAAAAAAGATCCAAAGCAATCAAACAAAGTGGTAAGGATTGGAAGgttaatacagtagaatacaaaaGACCCTGAATGAATCATATAGGAAGTCATAAAACAATACAATTGCAGTATATGTGACAACTTTGGACCTAATATTTACGTGGGATGTTAAAGCAAATACCAACAAGTGATACATCAAAACTAAGGCTGCTATATGGATGTTGATCATATACACAGAACAGAATTCTCTGTAGCCAATCGAAAACTAAAACAAAACTATTTTGTCAAGTCCGCAAACCATATGTTCAACTCCACATATACATTCACATTGTATGTAAAGCTTTGCATTTGTGCATGTCCAATAAGAGATAAACTGTGTCTTGGGTGAAGAGTGTAAAAAAATATTCCCTGACTAAGAataacatttgtatttttatattCTGTAGAAAAGCTTTATGGATTCAGACCATATGGTCTAAGGTTGCGCATTGGGGTTGAGTGATCTGAAGATAGAAGCCAGCACCCATAAGAGCTTCTCAAGAGAGAAGAATGCATTGGATTTGTCAGCTCTATTACACTGTACACGAGTCCAGAAGCAGAATGCTTTCTCACTGATGGCAAACATGTAAAACATATTTGGAGACAGGCTGCAGAAGTCCTGAAATAACAAGAGGCTGCTTAATCCTAACATCCTGCCGCTTGGATGTGTAATACTCTATTCTGTTGAGGAGCGTCCACATCTGACTCTACTGCCACCCCTCTGCGGGAGAGGGGACTGCCTAGGGGTCAGGGAGTTATCGACAAACAGTTATTCTCTGGACCACATATCTAAAAAGGCACTAGGTTGGTTATAGACAGTCAGAATGACAAAAAAATGCATCCGTGTGTGTCCGGGGTTGTGGGGCTAGTGAGTAAACAAATTTAAACAAATCTCTCAGTCCACAATGTAATGAAACTACAAAAGGAGTGGCAAGATTTGAAAGCGAAAAAGATCAGTCATCATTTGACAATCCCCCTTGTTTGGATTAAAGATTGAAGAAAAATCCCACACATTTGCCTCAGTCAATCAACTAGGAATAGGTCAGAATAATCTGTAGAAGATCCCTCTCAATCCACTTTAGATACAAAAAGTGGGTTTAGAACATTTTCTTAGGCTTAAAATAAATGCCTAAAAAAGAAATCATATAGTCAAAGTCCACAGAGCACAGCAATTTCATGAAAACTGTGTGGGATTTTACCTTATACTGAACCTGATGAGCATATTGAGAGTTCAATAAATTTGAACAAGTGCTTACTGATCCATTTCATAACAAATAGTACGTATGTGAAGAAGGCCTCTCTGTAGCCCAATGTTTAGATAAGGACCAAATAGATGTGTTGCAGTAAATATATCTGCATGGTAATACAGATCTGTCAATCAATGGTAATGCGAGTAAGATGTAGGCTTTTGAGCGTGTTAACAGAACAATAACTAAAAATCAACACAAAATTGTCAACACATCAATTACTGTATGCAATGATGAACCCAACCTATATTTAATAAGATAAAAATACTGATGCTATAGGC

Function

NR:

description
PREDICTED: SRSF protein kinase 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55883 False 1878 lncRNA 0.38 3 46025782 46027776
TU55884 True 1862 lncRNA 0.37 4 46025782 46027776

Neighbor

gene id symbol gene type direction distance location
LOC110523825 LOC106573223 coding upstream 554269 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 570955 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 579369 45427670 ~ 45446413 (+)
LOC110523687 LOC106573214 coding upstream 910434 45092982 ~ 45115348 (+)
LOC110523657 NA coding upstream 953349 45071354 ~ 45072433 (+)
wt-t1a wt-t1a coding downstream 114230 46142006 ~ 46159522 (+)
LOC110523948 LOC106573232 coding downstream 221943 46249719 ~ 46267255 (+)
LOC118962389 dcdc1 coding downstream 441720 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 471234 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 476038 46503814 ~ 46505112 (+)
G50035 LOC106573227 non-coding upstream 573 46024204 ~ 46025209 (+)
G50034 NA non-coding upstream 1854 46023721 ~ 46023928 (+)
G50026 NA non-coding upstream 12933 46012482 ~ 46012849 (+)
G50024 LOC106573227 non-coding upstream 15691 46009789 ~ 46010091 (+)
G50022 NA non-coding upstream 17245 46007971 ~ 46008537 (+)
G50057 NA non-coding downstream 23411 46051187 ~ 46092486 (+)
G50089 NA non-coding downstream 80848 46108624 ~ 46108841 (+)
G50092 NA non-coding downstream 84835 46112611 ~ 46112818 (+)
G50098 NA non-coding downstream 95245 46123021 ~ 46123223 (+)
G50180 NA non-coding downstream 245102 46272878 ~ 46273108 (+)
G50010 LOC106573227 other upstream 32891 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 289002 45730241 ~ 45736780 (+)
G49142 NA other upstream 607602 45414706 ~ 45418180 (+)
G48976 NA other upstream 879142 45145278 ~ 45146640 (+)
LOC110524042 NA other downstream 830132 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 1199470 47227246 ~ 47260224 (+)
G52080 NA other downstream 1978898 48006674 ~ 48024958 (+)
G52324 NA other downstream 2352766 48380542 ~ 48383257 (+)
G53181 NA other downstream 2865721 48893497 ~ 48893912 (+)

Expression


Co-expression Network