Gene
RNA
| Item | Value |
|---|---|
| gene id | G50357 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 46261075 ~ 46265574 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| paired box protein, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU56255 | False | 665 | lncRNA | 0.38 | 4 | 46261075 | 46265574 |
| TU56256 | True | 544 | lncRNA | 0.46 | 2 | 46261075 | 46265025 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tcp11l1 | tcp11l1 | coding | downstream | 163968 | 46085582 ~ 46097107 (-) |
| LOC110523921 | LOC106573228 | coding | downstream | 184334 | 46025778 ~ 46076741 (-) |
| LOC110523913 | LOC106573227 | coding | downstream | 235870 | 45987946 ~ 46025205 (-) |
| LOC110523903 | LOC106573225 | coding | downstream | 393977 | 45730235 ~ 45867098 (-) |
| LOC110523892 | LOC106573278 | coding | downstream | 580417 | 45632171 ~ 45680658 (-) |
| LOC110524015 | LOC106573241 | coding | upstream | 471861 | 46737435 ~ 46743033 (-) |
| LOC110524028 | LOC106561496 | coding | upstream | 551482 | 46817056 ~ 46839553 (-) |
| LOC118964698 | NA | coding | upstream | 635747 | 46901321 ~ 46902393 (-) |
| LOC118964697 | NA | coding | upstream | 680474 | 46946048 ~ 46947526 (-) |
| LOC118964694 | NA | coding | upstream | 707195 | 46972769 ~ 46974689 (-) |
| G50307 | NA | non-coding | downstream | 66355 | 46194492 ~ 46194720 (-) |
| G50306 | NA | non-coding | downstream | 67019 | 46193494 ~ 46194056 (-) |
| G50282 | wt1 | non-coding | downstream | 101555 | 46156725 ~ 46159520 (-) |
| G50262 | NA | non-coding | downstream | 150104 | 46110654 ~ 46110971 (-) |
| G50234 | NA | non-coding | downstream | 243753 | 46016072 ~ 46017322 (-) |
| G50360 | NA | non-coding | upstream | 7692 | 46273266 ~ 46273506 (-) |
| G50362 | NA | non-coding | upstream | 9199 | 46274773 ~ 46274985 (-) |
| G50366 | NA | non-coding | upstream | 12002 | 46277576 ~ 46277811 (-) |
| G50367 | NA | non-coding | upstream | 12733 | 46278307 ~ 46278542 (-) |
| G50411 | NA | non-coding | upstream | 82073 | 46347647 ~ 46347863 (-) |
| G49962 | NA | other | downstream | 311124 | 45948958 ~ 45949951 (-) |
| G49774 | NA | other | downstream | 539951 | 45720805 ~ 45721124 (-) |
| tspan9a | LOC106573177 | other | downstream | 3132046 | 42852829 ~ 43129052 (-) |
| G41868 | NA | other | downstream | 7239050 | 39021805 ~ 39022025 (-) |
| G40768 | LOC106573348 | other | downstream | 8069339 | 38187488 ~ 38191736 (-) |
| G51214 | NA | other | upstream | 799200 | 47064774 ~ 47236625 (-) |
| G51285 | LOC106561952 | other | upstream | 1023365 | 47288939 ~ 47289681 (-) |
| G51649 | LOC106573246 | other | upstream | 1112067 | 47377641 ~ 47378543 (-) |
| LOC110524104 | LOC106573248 | other | upstream | 1276802 | 47541224 ~ 47561223 (-) |
| LOC110524264 | LOC106573263 | other | upstream | 2028534 | 48291626 ~ 48304829 (-) |
