G50182


Basic Information

Item Value
gene id G50182
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46275417 ~ 46275638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU56076
GTTTTGTTTACACAAGAACAAGTGGAGATTTGACTAATTGGATGacaaaccacttctgtattgCTTAACTTACTCGAATTTGAGTACTATATGTTAACCCTCATAACATCAACTGTTTTACATACATGGATTACCAACTGGGGAACAAACTATCGGAAAAGCTATAACCATAGCAACATATCAACTTAATTTGTATCAAAACATCATTAGACATGTTAATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56076 True 222 lncRNA 0.50 1 46275417 46275638

Neighbor

gene id symbol gene type direction distance location
LOC110523948 LOC106573232 coding upstream 8162 46249719 ~ 46267255 (+)
wt-t1a wt-t1a coding upstream 115895 46142006 ~ 46159522 (+)
LOC110523825 LOC106573223 coding upstream 803904 45466496 ~ 45471513 (+)
LOC118964647 NA coding upstream 820590 45452036 ~ 45454827 (+)
LOC110523812 facr1 coding upstream 829004 45427670 ~ 45446413 (+)
LOC118962389 dcdc1 coding downstream 193858 46469496 ~ 46477752 (+)
LOC118964304 dcdc5 coding downstream 223372 46499010 ~ 46503478 (+)
LOC110532345 dcdc5 coding downstream 228176 46503814 ~ 46505112 (+)
LOC118964305 NA coding downstream 229610 46505248 ~ 46508046 (+)
LOC118966744 NA coding downstream 236898 46512536 ~ 46512590 (+)
G50180 NA non-coding upstream 2309 46272878 ~ 46273108 (+)
G50098 NA non-coding upstream 152194 46123021 ~ 46123223 (+)
G50092 NA non-coding upstream 162599 46112611 ~ 46112818 (+)
G50089 NA non-coding upstream 166576 46108624 ~ 46108841 (+)
G50057 NA non-coding upstream 182931 46051187 ~ 46092486 (+)
G50192 NA non-coding downstream 16520 46292158 ~ 46292372 (+)
G50194 NA non-coding downstream 18765 46294403 ~ 46294610 (+)
G50200 NA non-coding downstream 30362 46306000 ~ 46306226 (+)
G50409 NA non-coding downstream 71165 46346803 ~ 46347162 (+)
G50410 NA non-coding downstream 71701 46347339 ~ 46347540 (+)
G50010 LOC106573227 other upstream 282526 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 538637 45730241 ~ 45736780 (+)
G49142 NA other upstream 857237 45414706 ~ 45418180 (+)
G48976 NA other upstream 1128777 45145278 ~ 45146640 (+)
LOC110523657 NA other upstream 1202988 45071354 ~ 45072433 (+)
LOC110524042 NA other downstream 582270 46854230 ~ 46861465 (+)
LOC110520864 NA other downstream 951608 47227246 ~ 47260224 (+)
G52080 NA other downstream 1731036 48006674 ~ 48024958 (+)
G52324 NA other downstream 2104904 48380542 ~ 48383257 (+)
G53181 NA other downstream 2617859 48893497 ~ 48893912 (+)

Expression


Co-expression Network