G50674 (LOC106573279)


Basic Information

Item Value
gene id G50674
gene name LOC106573279
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46933489 ~ 47188884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU56610
GGGATGCGGGCATGTGCCCCCGCTTGATAGGAGGCTGTTCTGCCAGTGGGACCAAGGGGGTCAAGAGGATTTCAACGGGGCACTTCTCACCCGCCTGCACGGCTCTCCTACTGGTCAATAAGGGGGAGTGGTCGGTGCGACCTGTGTGGCTGGGCGTAGGTCTGGGCAGGGGGTGACAGCCATCATCTCCGCCTACGTTAGCTGGGTGGCAGACTAAAGGTGGACCACAGAGGAACATCCTCTCAGTGCTACTGAAGGACAGGGGCTCAGAGGGTAATATGATTTGTTTGTCACCCACTTGTTCTGGTAGCTGCTGGTCCAGCATAGCAGACCGGATCTGTAAGAGCTGGATCCTCTTCGACACACTCCGTGATCTGGCGTTGGCAGGCCGGGCTGGCACTGGGGAGGCAGGTGGGGCAGGCACTCGGCTGGAAGGAACCGGAGAAGC

Function

NR:

description
PREDICTED: flocculation protein FLO11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56610 True 448 lncRNA 0.60 2 46933489 47188884

Neighbor

gene id symbol gene type direction distance location
LOC110524042 NA coding upstream 72024 46854230 ~ 46861465 (+)
LOC110524021 LOC106573242 coding upstream 123473 46798486 ~ 46810016 (+)
LOC110524008 LOC106573239 coding upstream 196626 46632435 ~ 46736863 (+)
LOC110524001 mppd2 coding upstream 357548 46525358 ~ 46575941 (+)
LOC118966744 NA coding upstream 420899 46512536 ~ 46512590 (+)
LOC110524064 NA coding downstream 54973 47243857 ~ 47246448 (+)
LOC110520864 NA coding downstream 67709 47227246 ~ 47260224 (+)
lamb4 lamb4 coding downstream 127414 47316298 ~ 47339999 (+)
LOC110524092 LOC106573246 coding downstream 151282 47340166 ~ 47381610 (+)
LOC110524097 LOC106573247 coding downstream 194729 47383613 ~ 47401144 (+)
G50702 NA non-coding upstream 11682 46874200 ~ 46921807 (+)
G50701 NA non-coding upstream 46698 46873088 ~ 46886791 (+)
G50672 NA non-coding upstream 95057 46837786 ~ 46838432 (+)
G50661 NA non-coding upstream 124050 46807346 ~ 46809439 (+)
G50645 NA non-coding upstream 155090 46778167 ~ 46778399 (+)
G50759 NA non-coding downstream 25836 47214720 ~ 47239007 (+)
G50682 NA non-coding downstream 57984 47246868 ~ 47247246 (+)
LOC110524112 LOC106573249 non-coding downstream 241872 47430652 ~ 47579162 (+)
G51442 NA non-coding downstream 399139 47588023 ~ 47629944 (+)
G50010 LOC106573227 other upstream 940598 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 1196709 45730241 ~ 45736780 (+)
G49142 NA other upstream 1515309 45414706 ~ 45418180 (+)
G48976 NA other upstream 1786849 45145278 ~ 45146640 (+)
G52080 NA other downstream 817790 48006674 ~ 48024958 (+)
G52324 NA other downstream 1191658 48380542 ~ 48383257 (+)
G53181 NA other downstream 1704613 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 2848690 50037523 ~ 50184257 (+)

Expression


Co-expression Network