G51214


Basic Information

Item Value
gene id G51214
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47064774 ~ 47236625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU57229
CAGTTTTTTTTAGCACCCTTTCTTACCCAAAGAGAAATAAGTTGCTAGTTACTTTGGCTTTGCACTCAAAAGAGTGAAACACCACAACAGGAATTATGATTGTGGAAAGTGTAAAATTAGGTAGGACTGCCAATTCACATGCCTTCCTTTAGCCATATCACTCATACTGTTTCTTGTTTAGTTCATCCATAAAAGCAGATGCGCTTTAGTTGCATCCAGGAACTTGTATAATGTGCTTATGTTATGCTTATACTTGCTTTTTTACCTTGAAAGTCGTCTTAAAAAAGGAAATTGTAATATATGTTTGTAGGACCTCTATCAGTCAATGATAACAGTTATTGGTGTCCCCCAGCTCATCCCCTTTGTTGTGTGCCGAGCAATCTTGTCATTCTTTTAAGTGTCAACCATTCTTTTAGAAACTTGTCTTCCTTTACTCAGGCACTGCAGAGTCTAAGAAGACGCATGGAAACTCTATAAGAAACATAATTCAATTTGTAGGCCagatttgaaaaggaaataataaaTCCTGAAGCTCAGATGTCAGACACCGAGGCTGCCAGTACCGTATACATAAGTTAGTGTCATTCAACACCAGCACATACTGTAAGTTCTTGTGAATCTGCTTTGTAAGTCAAAGACAGGCAAGTCTGCACTTTCATCCCAAATGATTTGTATTATAACAAAATGTAAAGTAGAGGAGCACAGATCCATAACTAAtcaaaatgtccaaatacttTGTGTTATCTCTCTAGTTATCTAAGATGCTTTTTTCTGCAATACAGTTGGATACAAGACTGATGACTCAATAACTAGTATTGACAACAGTGAAGATGTTATGTCCCAGGGCCATCAGGTTCATCAGAGGAAGGCAATTTCTCTGAAAAAAATCTGACCGGTATGCCTATACCTTACATACACATGGACCTATTCTTATCTGATATGTCAGTGCATTTTCACTCTGtagtcaaataaaatgttattggtcacatgcacatggttagcagatgtttatacgagtgtagcgaaatgcttgtgtttctatttCTGATTTTGCAGTAATATcttacaagtaatctaacaatttcacaacaactaccttatctcttcaactgatcgctgctcACACCTGCCCGCcagcccagcatcactactctggatggttctgacttagcatatgtggacaactacaaatacctagctgtctggttagactgtaaactctccttccagactcacattaagcatctccaatccaaaatgaaatctagaatcagcttcctatttcgcagcaaagcatccatcactcatgctgccaaacgtactcatgctgccaaatgatccttgacttcggcgatgtcatttacaaaatagcctccaacactctactcagcaaattggatgcagtctatcacagtgccatctgttttgtcaccaaagccccatatactacccaccattgcgacctgtatgctctcgaaggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctataagtctttgctagataaagccccgccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcactccagcaggtatatttcactggtcacccccttagcaaattcctccttcggccacctttccttccagttctctgctgccaatgactggaacgaactgcaaaaatcactgaagctggggactcatatctccctcactagctttaagcaccagctgtccgagcagctcatagatcactgcacctgtacatagccctccTGTAatcagcccatccaactacctcatccccatactgttatctattttatttattttgctcctttgcaccccagtatctctacttgtacactcatcttctgcacatctatcactccagtgtttaattgctatattgtaattatttcgccactatggcctatttattgccgtacctccgttatcctacctcatttgcacacattatATAGacgttttctattgtattattgactgcatgtttgtttattccatgtgtaactctgtgttgttgtttgtgttgcactgctttgctttatcttggccaggtcgcagttgtaattgagaacATTTTCACTCTGTAGTGTCAACTTATGGCCGTACTGTGCTGGTCCAGATCAATCCTGTCTTTATCAGTTAGTGTATTTCCAACCATGCCAGCACAGAACGGTTCGGTTTGGATTGGACACAagtcaAGACGTTAGATCTGGAACTAGTGTGTCAGGATAGATGATAACACAGAAGGATTACCACGCTTTACATTGTTTCTCTTGAGGGAGGGAACTTGATTTAATAGGGATTGCTTTTATTAGAAGGTTTACATTGCAAACAGATTGTTGGGCTTAGATTCCATACAGATTGAGTCTGCCTTGATGTCAGCATTGCACATTCTCCTCTCACATCCTTATCTATGTAGTTATTTAGTTGGGATTATTAGTTTAATTTCAACACAGTCTCTGCAGATACAGCTGTAACCTTGTAGAGTTAATAC
>TU57237
CTGAGCATGATCACAACAAAAGTAGCTGTGCAGCACGTTTTttaaggaagaggaggatagttGCAGACGTTCGCATTCATGCAAGAAGGAGAGATGTCAGCGATTCGGGCCAATGACCAAGGGAAAGCTGGGACAAAAGAGAGAAATGGATGCTGCGGCCACTGATTGCGCATCAGAGAATGACTCTGAGAAAGAGGAGTCATCTGAAGAATCCTATGAAGAAAATCTGACCGGAGAGATGTCAGCGATTCGGGCCAAACAACCAATAACCAAGGGAAGACTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57229 False 2550 TUCP 0.41 4 47064774 47119033
TU57237 True 285 lncRNA 0.48 4 47207383 47236625

Neighbor

gene id symbol gene type direction distance location
LOC118964695 NA coding downstream 34693 47171414 ~ 47172690 (-)
LOC118964699 NA coding downstream 61887 47144422 ~ 47145496 (-)
LOC118964692 NA coding downstream 87719 47117854 ~ 47119664 (-)
LOC118964691 NA coding downstream 113482 47091238 ~ 47093901 (-)
LOC118964693 NA coding downstream 168803 47037419 ~ 47038580 (-)
LOC110524061 LOC106573279 coding upstream 2507 47142524 ~ 47286344 (-)
LOC110524104 LOC106573248 coding upstream 304599 47541224 ~ 47561223 (-)
LOC118964710 NA coding upstream 360079 47596704 ~ 47604280 (-)
LOC110524125 LOC106573250 coding upstream 397255 47633880 ~ 47689066 (-)
LOC110524148 LOC106573251 coding upstream 458557 47695182 ~ 47722400 (-)
G51236 NA non-coding downstream 43791 47129239 ~ 47163592 (-)
G51229 NA non-coding downstream 69300 47109135 ~ 47138083 (-)
G51137 NA non-coding downstream 84049 47074548 ~ 47123334 (-)
G51209 NA non-coding downstream 111097 47046203 ~ 47096286 (-)
G51193 NA non-coding downstream 139997 47015304 ~ 47067386 (-)
G51261 NA non-coding upstream 16409 47253034 ~ 47254755 (-)
G51277 NA non-coding upstream 38772 47275397 ~ 47276348 (-)
G51652 NA non-coding upstream 147033 47383658 ~ 47384488 (-)
G51802 NA non-coding upstream 452495 47689120 ~ 47690770 (-)
G51899 LOC106573253 non-coding upstream 569929 47806554 ~ 47806900 (-)
G51214 NA other downstream 88350 47064774 ~ 47236625 (-)
G49962 NA other downstream 1257432 45948958 ~ 45949951 (-)
G49774 NA other downstream 1486259 45720805 ~ 45721124 (-)
tspan9a LOC106573177 other downstream 4078354 42852829 ~ 43129052 (-)
G41868 NA other downstream 8185358 39021805 ~ 39022025 (-)
G51285 LOC106561952 other upstream 52314 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 141016 47377641 ~ 47378543 (-)
LOC110524264 LOC106573263 other upstream 1057483 48291626 ~ 48304829 (-)
LOC110532382 LOC106573120 other upstream 1747560 48971580 ~ 49044257 (-)
LOC118964694 NA coding downstream 90085 46972769 ~ 46974689 (-)
LOC118964697 NA coding downstream 117248 46946048 ~ 46947526 (-)
LOC118964698 NA coding downstream 162381 46901321 ~ 46902393 (-)
LOC110524028 LOC106561496 coding downstream 225221 46817056 ~ 46839553 (-)
LOC118964696 NA coding upstream 87470 47206503 ~ 47207921 (-)
LOC118964701 NA coding upstream 111870 47230903 ~ 47231586 (-)
G51184 NA non-coding downstream 19422 46990948 ~ 47045352 (-)
G51181 NA non-coding downstream 82401 46977457 ~ 46982373 (-)
G51175 NA non-coding downstream 95629 46968445 ~ 46969145 (-)
G51165 NA non-coding downstream 97386 46924028 ~ 46967388 (-)
G51160 NA non-coding downstream 152815 46900164 ~ 46911959 (-)
G51246 NA non-coding upstream 70763 47189796 ~ 47219519 (-)
G40768 LOC106573348 other downstream 8873038 38187488 ~ 38191736 (-)

Expression


Co-expression Network