G51802


Basic Information

Item Value
gene id G51802
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47689120 ~ 47690770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU57893
atgaacgtagcaccttcaggagtttggaaattgctcccaaggatgaaccagacttgtcgaggtctacaatactttttctgaggtcttggctgatttctttagattttcccatgatgtcaagcaaagaagcactgagtttgaaggtaggccttgaaatacatccacaggtacacctacgattgactcaaatgatgtgaagtagcctatcagaagcttctaaagccatgacataattttctggaattttcaaagtgaagtacTCGGgcggtaaacaattgttggaaacattacttgtgtcatgcacaaagtagatgtcctaaccgacttggaaGACATTTTTTtatgagttttattgactccaacctaagtgtatgtaaacttcagacttcaactttAGATAGATACCACAAATTACTCAAGGAAAATATGTTATGCCAATAACCAGATAAAATGATTTAGGATTAagacacactacatgaccaaaggtatgtggacacctgcttgtcgaatatctcattccaaaatcatgggcattaatatggagttggtcccccctttgttactacaacagcctccactcttctgggagggCTTTagactagatgttggaactttgctgcagggacttgcttccattcatccacaaAAGCGTTAGTgaagtcaggcactgatgttgggcgattaagcctggctcgcagtcggcgttccaattcatccaaaaggtgttcaatggggttgagttcagggctctgtgcaagccagtcaatttcttccacaccgatatcaacaaaccctttctgtattagcctcgctttgtgcacggggcattgtcatgctgaaacaggaaagggccttcctcaaactgttggcAAGAAGTGGTAAggacagaattgtctagaatgtcattgtatgctgtagcattaagatttgcCTTCACTGGAATTTAGGGGGGACTCACCCGAACCATGAAACTACCCCAGAtcgttattcctcctccaccaaacattacagttggcactatgcattgagtcaggtagcgttctcctggtataCGCAAAACCCAGAGTCATTCGTTGGACTGCCGGATGGTCAAGCGTGATCCATCACTCCAGATAACGCGTTTCCACTGAGAGTCCAATGgctgtgagctttacaccactccagccgatgtttggtattgcgcatggtgatcttaggcttgtgtgcagctactctgccatggaaaccaatttcatgaagctcccgacaaacagttattgtgctgacattgcttccagaggcagtttggaactcggtagtgagtgttgcaactgagaacATACAATTTTTACGCGCTATGCGCTACAGCACCTGGCGGTtgcctagacgtttccacttcacaataacagtacttatagttgaccggggcagctctagcagggcagaaatatgatgaactgactagttggaaaggtggcatcctatgacggtgccatgttgaaagtcactgagctcttcagtaagaccattctactgccagtgtttgtctatggagattgtatggctgtgtgctcgattttatacacctgtcagcaacaggtgtagcCTACGTAGccgaatctactaatttgaaggggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57893 True 1617 lncRNA 0.41 2 47689120 47690770

Neighbor

gene id symbol gene type direction distance location
LOC110524125 LOC106573250 coding downstream 54 47633880 ~ 47689066 (-)
LOC118964710 NA coding downstream 84840 47596704 ~ 47604280 (-)
LOC110524104 LOC106573248 coding downstream 127897 47541224 ~ 47561223 (-)
LOC110524061 LOC106573279 coding downstream 445914 47142524 ~ 47286344 (-)
LOC118964701 NA coding downstream 457534 47230903 ~ 47231586 (-)
LOC110524148 LOC106573251 coding upstream 4412 47695182 ~ 47722400 (-)
LOC110532355 faap24 coding upstream 34843 47725613 ~ 47733539 (-)
LOC110524174 LOC106573254 coding upstream 94868 47785638 ~ 47788293 (-)
LOC110524205 LOC106573257 coding upstream 352722 48043492 ~ 48049196 (-)
LOC110524212 LOC106573258 coding upstream 381059 48071829 ~ 48123356 (-)
G51652 NA non-coding downstream 304632 47383658 ~ 47384488 (-)
G51277 NA non-coding downstream 412772 47275397 ~ 47276348 (-)
G51261 NA non-coding downstream 434365 47253034 ~ 47254755 (-)
G51214 NA non-coding downstream 452495 47064774 ~ 47236625 (-)
G51899 LOC106573253 non-coding upstream 115784 47806554 ~ 47806900 (-)
G51914 NA non-coding upstream 136198 47826968 ~ 47830052 (-)
G51977 NA non-coding upstream 200708 47891478 ~ 47891884 (-)
G51993 NA non-coding upstream 210459 47901229 ~ 47901581 (-)
G52017 NA non-coding upstream 224178 47914948 ~ 47915246 (-)
G51649 LOC106573246 other downstream 310577 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 399439 47288939 ~ 47289681 (-)
G49962 NA other downstream 1739169 45948958 ~ 45949951 (-)
LOC110524264 LOC106573263 other upstream 603338 48291626 ~ 48304829 (-)
LOC110532382 LOC106573120 other upstream 1293415 48971580 ~ 49044257 (-)
G55408 NA other upstream 2720864 50411634 ~ 50412128 (-)
G55627 NA other upstream 3074593 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 3086977 50777716 ~ 50792069 (-)

Expression


Co-expression Network