G52033


Basic Information

Item Value
gene id G52033
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47925334 ~ 47925952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58127
atggttcgtcggagggcatagcgggatttcttgtaagctccttgaaagtggcacctctaccctttagctcagtgcggatgttgcctgtaatccatggcttctggttggggtatgtacgtacggtcactgtggggacgacgtcatcgatgcacttattgatgaagccagtgactgatgtggtgtactcctcaatgccatcagaagaatcccagaacatattccagtctgtgctagcaaaacagtcctgtagtttaggatctgcttcatctgacccctTTCTAATTGACTGAGTCActtgtgcttcctgctttagtttctgcttgttagcaggaatcaggaagatagaattatggtcacatttgccaaattgagggcgagggagagctttgtacacatctctgtgtgtggtagaaattaggtaaacaGATTTTAGTTTCCCTGCATTTGAAGTCCCCGACCCCTAGGAgctccgcctctggatgagcattttcctgtttgcttatgtccgtttacagctcattgagtgtggtcttagtgccagtatcGGTTTGTTGTGGTATAttgacagctacgaaaaatataaatGACAACTcccttggtaaatagtgtggtctacagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58127 True 619 lncRNA 0.46 1 47925334 47925952

Neighbor

gene id symbol gene type direction distance location
LOC110524174 LOC106573254 coding downstream 137041 47785638 ~ 47788293 (-)
LOC110532355 faap24 coding downstream 191795 47725613 ~ 47733539 (-)
LOC110524148 LOC106573251 coding downstream 202934 47695182 ~ 47722400 (-)
LOC110524125 LOC106573250 coding downstream 236268 47633880 ~ 47689066 (-)
LOC118964710 NA coding downstream 321054 47596704 ~ 47604280 (-)
LOC110524205 LOC106573257 coding upstream 117540 48043492 ~ 48049196 (-)
LOC110524212 LOC106573258 coding upstream 145877 48071829 ~ 48123356 (-)
LOC110524242 NA coding upstream 293488 48219440 ~ 48247048 (-)
LOC110524264 LOC106573263 coding upstream 365674 48291626 ~ 48304829 (-)
LOC110524273 LOC106573264 coding upstream 387713 48313665 ~ 48396381 (-)
G52017 NA non-coding downstream 10088 47914948 ~ 47915246 (-)
G51993 NA non-coding downstream 23753 47901229 ~ 47901581 (-)
G51977 NA non-coding downstream 33450 47891478 ~ 47891884 (-)
G51914 NA non-coding downstream 95282 47826968 ~ 47830052 (-)
G51899 LOC106573253 non-coding downstream 118434 47806554 ~ 47806900 (-)
G52630 rpgrip1l non-coding upstream 39439 47965391 ~ 47965788 (-)
G52674 NA non-coding upstream 99362 48025314 ~ 48031630 (-)
G52690 NA non-coding upstream 115680 48041632 ~ 48041867 (-)
G52691 NA non-coding upstream 116090 48042042 ~ 48042340 (-)
G52694 NA non-coding upstream 123245 48049197 ~ 48054185 (-)
LOC110524104 LOC106573248 other downstream 364125 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 546791 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 635653 47288939 ~ 47289681 (-)
G51214 NA other downstream 806301 47064774 ~ 47236625 (-)
G49962 NA other downstream 1975383 45948958 ~ 45949951 (-)
LOC110532382 LOC106573120 other upstream 1058233 48971580 ~ 49044257 (-)
G55408 NA other upstream 2485682 50411634 ~ 50412128 (-)
G55627 NA other upstream 2839411 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 2851795 50777716 ~ 50792069 (-)

Expression


Co-expression Network