G52048


Basic Information

Item Value
gene id G52048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47936388 ~ 47936693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58142
gaatagaatatgctTCTAAGCACTTCTAAATGAATGtgaatgctaccatgattatggataattcTGAACGAATCGTGAATAAGGATGTGtaagaaagttacagatgcacaaatatcatacccccaagatacgctaacctctcatcattacaataacaggggtagtcaccccccaaaaatgctatgatatttgtgtgtctgtaggaAGGTTATGCTAATGTACaaaaattcccacagaagaacattgtttcttaatgttcttgggggaaaaaaattgagaaaatgactttaaatagaaccataagGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58142 True 306 lncRNA 0.35 1 47936388 47936693

Neighbor

gene id symbol gene type direction distance location
LOC110524181 LOC106573253 coding upstream 85229 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 111924 47789067 ~ 47824464 (+)
LOC110524160 LOC106573252 coding upstream 166579 47733556 ~ 47769809 (+)
LOC110524112 LOC106573249 coding upstream 357226 47430652 ~ 47579162 (+)
LOC110524097 LOC106573247 coding upstream 535244 47383613 ~ 47401144 (+)
rpgrip1l rpgrip1l coding downstream 12772 47949465 ~ 47978305 (+)
LOC110524199 LOC106573256 coding downstream 46353 47983046 ~ 48013346 (+)
LOC118964788 NA coding downstream 210706 48147399 ~ 48163741 (+)
LOC110524253 LOC106573262 coding downstream 320174 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 547192 48483885 ~ 48510535 (+)
G52034 NA non-coding upstream 10055 47925960 ~ 47926333 (+)
G51983 NA non-coding upstream 40343 47895827 ~ 47896045 (+)
G51946 NA non-coding upstream 61904 47873533 ~ 47874484 (+)
G51520 NA non-coding upstream 161370 47719911 ~ 47775018 (+)
G52063 NA non-coding downstream 7777 47944470 ~ 47944802 (+)
G52086 NA non-coding downstream 87637 48024330 ~ 48030842 (+)
G52099 NA non-coding downstream 105354 48042047 ~ 48042350 (+)
G52101 NA non-coding downstream 108064 48044757 ~ 48044972 (+)
G52102 NA non-coding downstream 108810 48045503 ~ 48045740 (+)
LOC110520864 NA other upstream 677490 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1074924 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 1943497 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2199608 45730241 ~ 45736780 (+)
G49142 NA other upstream 2518208 45414706 ~ 45418180 (+)
G52080 NA other downstream 69981 48006674 ~ 48024958 (+)
G52324 NA other downstream 443849 48380542 ~ 48383257 (+)
G53181 NA other downstream 956804 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 2100881 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3513129 51449353 ~ 51451460 (+)

Expression


Co-expression Network