Gene
RNA
| Item | Value |
|---|---|
| gene id | G52630 |
| gene name | rpgrip1l |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 47965391 ~ 47965788 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpgrip1l | Acts upstream of or within embryonic pattern specification. Predicted to be located in cilium. Predicted to be active in photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in several diseases, including Joubert syndrome 7; Meckel syndrome 5; anencephaly; retinitis pigmentosa 3; and vascular dementia. Orthologous to human RPGRIP1L (RPGRIP1 like). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58781 | True | 230 | lncRNA | 0.46 | 3 | 47965391 | 47965788 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524174 | LOC106573254 | coding | downstream | 177098 | 47785638 ~ 47788293 (-) |
| LOC110532355 | faap24 | coding | downstream | 231852 | 47725613 ~ 47733539 (-) |
| LOC110524148 | LOC106573251 | coding | downstream | 242991 | 47695182 ~ 47722400 (-) |
| LOC110524125 | LOC106573250 | coding | downstream | 276325 | 47633880 ~ 47689066 (-) |
| LOC118964710 | NA | coding | downstream | 361111 | 47596704 ~ 47604280 (-) |
| LOC110524205 | LOC106573257 | coding | upstream | 77704 | 48043492 ~ 48049196 (-) |
| LOC110524212 | LOC106573258 | coding | upstream | 106041 | 48071829 ~ 48123356 (-) |
| LOC110524242 | NA | coding | upstream | 253652 | 48219440 ~ 48247048 (-) |
| LOC110524264 | LOC106573263 | coding | upstream | 325838 | 48291626 ~ 48304829 (-) |
| LOC110524273 | LOC106573264 | coding | upstream | 347877 | 48313665 ~ 48396381 (-) |
| G52033 | NA | non-coding | downstream | 39439 | 47925334 ~ 47925952 (-) |
| G52017 | NA | non-coding | downstream | 50145 | 47914948 ~ 47915246 (-) |
| G51993 | NA | non-coding | downstream | 63810 | 47901229 ~ 47901581 (-) |
| G51977 | NA | non-coding | downstream | 73507 | 47891478 ~ 47891884 (-) |
| G51914 | NA | non-coding | downstream | 135339 | 47826968 ~ 47830052 (-) |
| G52674 | NA | non-coding | upstream | 59526 | 48025314 ~ 48031630 (-) |
| G52690 | NA | non-coding | upstream | 75844 | 48041632 ~ 48041867 (-) |
| G52691 | NA | non-coding | upstream | 76254 | 48042042 ~ 48042340 (-) |
| G52694 | NA | non-coding | upstream | 83409 | 48049197 ~ 48054185 (-) |
| G52734 | NA | non-coding | upstream | 165034 | 48130822 ~ 48131055 (-) |
| LOC110524104 | LOC106573248 | other | downstream | 404182 | 47541224 ~ 47561223 (-) |
| G51649 | LOC106573246 | other | downstream | 586848 | 47377641 ~ 47378543 (-) |
| G51285 | LOC106561952 | other | downstream | 675710 | 47288939 ~ 47289681 (-) |
| G51214 | NA | other | downstream | 846358 | 47064774 ~ 47236625 (-) |
| G49962 | NA | other | downstream | 2015440 | 45948958 ~ 45949951 (-) |
| LOC110532382 | LOC106573120 | other | upstream | 1018397 | 48971580 ~ 49044257 (-) |
| G55408 | NA | other | upstream | 2445846 | 50411634 ~ 50412128 (-) |
| G55627 | NA | other | upstream | 2799575 | 50765363 ~ 50767431 (-) |
| LOC110524514 | borcs5 | other | upstream | 2811959 | 50777716 ~ 50792069 (-) |
